Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHD entry

There are 6 chains in PDB entry 8GHD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	ILE 663
B	GLY 2	ILE 663
C	GLY 2	ILE 663
D	GLY 2	ILE 663
E	GLY 2	ILE 663
F	GLY 2	ILE 663

There are174 helices in PDB entry 8GHD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	122	139	Right-handed alpha
Helix 2	AA2	A	156	160	Right-handed 310
Helix 3	AA3	A	161	165	Right-handed 310
Helix 4	AA4	A	167	192	Right-handed alpha
Helix 5	AA5	A	193	195	Right-handed 310
Helix 6	AA6	A	199	206	Right-handed 310
Helix 7	AA7	A	212	222	Right-handed alpha
Helix 8	AA8	A	224	235	Right-handed alpha
Helix 9	AA9	A	257	270	Right-handed alpha
Helix 10	AB1	A	279	282	Right-handed 310
Helix 11	AB2	A	336	358	Right-handed alpha
Helix 12	AB3	A	364	379	Right-handed alpha
Helix 13	AB4	A	383	390	Right-handed alpha
Helix 14	AB5	A	391	394	Right-handed 310
Helix 15	AB6	A	395	407	Right-handed alpha
Helix 16	AB7	A	413	418	Right-handed alpha
Helix 17	AB8	A	423	435	Right-handed alpha
Helix 18	AB9	A	438	441	Right-handed 310
Helix 19	AC1	A	442	450	Right-handed alpha
Helix 20	AC2	A	458	483	Right-handed alpha
Helix 21	AC3	A	485	491	Right-handed alpha
Helix 22	AC4	A	492	504	Right-handed alpha
Helix 23	AC5	A	521	537	Right-handed alpha
Helix 24	AC6	A	537	545	Right-handed alpha
Helix 25	AC7	A	546	552	Right-handed alpha
Helix 26	AC8	A	553	557	Right-handed 310
Helix 27	AC9	A	573	581	Right-handed alpha
Helix 28	AD1	A	583	599	Right-handed alpha
Helix 29	AD2	A	617	643	Right-handed alpha
Helix 30	AD3	B	122	139	Right-handed alpha
Helix 31	AD4	B	156	160	Right-handed 310
Helix 32	AD5	B	161	165	Right-handed 310
Helix 33	AD6	B	167	192	Right-handed alpha
Helix 34	AD7	B	193	195	Right-handed 310
Helix 35	AD8	B	199	206	Right-handed 310
Helix 36	AD9	B	212	222	Right-handed alpha
Helix 37	AE1	B	224	235	Right-handed alpha
Helix 38	AE2	B	257	270	Right-handed alpha
Helix 39	AE3	B	279	282	Right-handed 310
Helix 40	AE4	B	336	358	Right-handed alpha
Helix 41	AE5	B	364	379	Right-handed alpha
Helix 42	AE6	B	383	390	Right-handed alpha
Helix 43	AE7	B	391	394	Right-handed 310
Helix 44	AE8	B	395	407	Right-handed alpha
Helix 45	AE9	B	413	418	Right-handed alpha
Helix 46	AF1	B	423	435	Right-handed alpha
Helix 47	AF2	B	438	441	Right-handed 310
Helix 48	AF3	B	442	450	Right-handed alpha
Helix 49	AF4	B	458	483	Right-handed alpha
Helix 50	AF5	B	485	491	Right-handed alpha
Helix 51	AF6	B	492	504	Right-handed alpha
Helix 52	AF7	B	521	537	Right-handed alpha
Helix 53	AF8	B	537	545	Right-handed alpha
Helix 54	AF9	B	546	552	Right-handed alpha
Helix 55	AG1	B	553	557	Right-handed 310
Helix 56	AG2	B	573	581	Right-handed alpha
Helix 57	AG3	B	583	599	Right-handed alpha
Helix 58	AG4	B	617	643	Right-handed alpha
Helix 59	AG5	C	122	139	Right-handed alpha
Helix 60	AG6	C	156	160	Right-handed 310
Helix 61	AG7	C	161	165	Right-handed 310
Helix 62	AG8	C	167	192	Right-handed alpha
Helix 63	AG9	C	193	195	Right-handed 310
Helix 64	AH1	C	199	206	Right-handed 310
Helix 65	AH2	C	212	222	Right-handed alpha
Helix 66	AH3	C	224	235	Right-handed alpha
Helix 67	AH4	C	257	270	Right-handed alpha
Helix 68	AH5	C	279	282	Right-handed 310
Helix 69	AH6	C	336	358	Right-handed alpha
Helix 70	AH7	C	364	379	Right-handed alpha
Helix 71	AH8	C	383	390	Right-handed alpha
Helix 72	AH9	C	391	394	Right-handed 310
Helix 73	AI1	C	395	407	Right-handed alpha
Helix 74	AI2	C	413	418	Right-handed alpha
Helix 75	AI3	C	423	435	Right-handed alpha
Helix 76	AI4	C	438	441	Right-handed 310
Helix 77	AI5	C	442	450	Right-handed alpha
Helix 78	AI6	C	458	483	Right-handed alpha
Helix 79	AI7	C	485	491	Right-handed alpha
Helix 80	AI8	C	492	504	Right-handed alpha
Helix 81	AI9	C	521	537	Right-handed alpha
Helix 82	AJ1	C	537	545	Right-handed alpha
Helix 83	AJ2	C	546	552	Right-handed alpha
Helix 84	AJ3	C	553	557	Right-handed 310
Helix 85	AJ4	C	573	581	Right-handed alpha
Helix 86	AJ5	C	583	599	Right-handed alpha
Helix 87	AJ6	C	617	643	Right-handed alpha
Helix 88	AJ7	D	122	139	Right-handed alpha
Helix 89	AJ8	D	156	160	Right-handed 310
Helix 90	AJ9	D	161	165	Right-handed 310
Helix 91	AK1	D	167	192	Right-handed alpha
Helix 92	AK2	D	193	195	Right-handed 310
Helix 93	AK3	D	199	206	Right-handed 310
Helix 94	AK4	D	212	222	Right-handed alpha
Helix 95	AK5	D	224	235	Right-handed alpha
Helix 96	AK6	D	257	270	Right-handed alpha
Helix 97	AK7	D	279	282	Right-handed 310
Helix 98	AK8	D	336	358	Right-handed alpha
Helix 99	AK9	D	364	379	Right-handed alpha
Helix 100	AL1	D	383	390	Right-handed alpha
Helix 101	AL2	D	391	394	Right-handed 310
Helix 102	AL3	D	395	407	Right-handed alpha
Helix 103	AL4	D	413	418	Right-handed alpha
Helix 104	AL5	D	423	435	Right-handed alpha
Helix 105	AL6	D	438	441	Right-handed 310
Helix 106	AL7	D	442	450	Right-handed alpha
Helix 107	AL8	D	458	483	Right-handed alpha
Helix 108	AL9	D	485	491	Right-handed alpha
Helix 109	AM1	D	492	504	Right-handed alpha
Helix 110	AM2	D	521	537	Right-handed alpha
Helix 111	AM3	D	537	545	Right-handed alpha
Helix 112	AM4	D	546	552	Right-handed alpha
Helix 113	AM5	D	553	557	Right-handed 310
Helix 114	AM6	D	573	581	Right-handed alpha
Helix 115	AM7	D	583	599	Right-handed alpha
Helix 116	AM8	D	617	643	Right-handed alpha
Helix 117	AM9	E	122	139	Right-handed alpha
Helix 118	AN1	E	156	160	Right-handed 310
Helix 119	AN2	E	161	165	Right-handed 310
Helix 120	AN3	E	167	192	Right-handed alpha
Helix 121	AN4	E	193	195	Right-handed 310
Helix 122	AN5	E	199	206	Right-handed 310
Helix 123	AN6	E	212	222	Right-handed alpha
Helix 124	AN7	E	224	235	Right-handed alpha
Helix 125	AN8	E	257	270	Right-handed alpha
Helix 126	AN9	E	279	282	Right-handed 310
Helix 127	AO1	E	336	358	Right-handed alpha
Helix 128	AO2	E	364	379	Right-handed alpha
Helix 129	AO3	E	383	390	Right-handed alpha
Helix 130	AO4	E	391	394	Right-handed 310
Helix 131	AO5	E	395	407	Right-handed alpha
Helix 132	AO6	E	413	418	Right-handed alpha
Helix 133	AO7	E	423	435	Right-handed alpha
Helix 134	AO8	E	438	441	Right-handed 310
Helix 135	AO9	E	442	450	Right-handed alpha
Helix 136	AP1	E	458	483	Right-handed alpha
Helix 137	AP2	E	485	491	Right-handed alpha
Helix 138	AP3	E	492	504	Right-handed alpha
Helix 139	AP4	E	521	537	Right-handed alpha
Helix 140	AP5	E	537	545	Right-handed alpha
Helix 141	AP6	E	546	552	Right-handed alpha
Helix 142	AP7	E	553	557	Right-handed 310
Helix 143	AP8	E	573	581	Right-handed alpha
Helix 144	AP9	E	583	599	Right-handed alpha
Helix 145	AQ1	E	617	643	Right-handed alpha
Helix 146	AQ2	F	122	139	Right-handed alpha
Helix 147	AQ3	F	156	160	Right-handed 310
Helix 148	AQ4	F	161	165	Right-handed 310
Helix 149	AQ5	F	167	192	Right-handed alpha
Helix 150	AQ6	F	193	195	Right-handed 310
Helix 151	AQ7	F	199	206	Right-handed 310
Helix 152	AQ8	F	212	222	Right-handed alpha
Helix 153	AQ9	F	224	235	Right-handed alpha
Helix 154	AR1	F	257	270	Right-handed alpha
Helix 155	AR2	F	279	282	Right-handed 310
Helix 156	AR3	F	336	358	Right-handed alpha
Helix 157	AR4	F	364	379	Right-handed alpha
Helix 158	AR5	F	383	390	Right-handed alpha
Helix 159	AR6	F	391	394	Right-handed 310
Helix 160	AR7	F	395	407	Right-handed alpha
Helix 161	AR8	F	413	418	Right-handed alpha
Helix 162	AR9	F	423	435	Right-handed alpha
Helix 163	AS1	F	438	441	Right-handed 310
Helix 164	AS2	F	442	450	Right-handed alpha
Helix 165	AS3	F	458	483	Right-handed alpha
Helix 166	AS4	F	485	491	Right-handed alpha
Helix 167	AS5	F	492	504	Right-handed alpha
Helix 168	AS6	F	521	537	Right-handed alpha
Helix 169	AS7	F	537	545	Right-handed alpha
Helix 170	AS8	F	546	552	Right-handed alpha
Helix 171	AS9	F	553	557	Right-handed 310
Helix 172	AT1	F	573	581	Right-handed alpha
Helix 173	AT2	F	583	599	Right-handed alpha
Helix 174	AT3	F	617	643	Right-handed alpha

There are 30 sheets in PDB entry 8GHD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	3	14	anti-parallel
Strand 3	A	75	84	anti-parallel
Strand 4	A	91	99	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	21	28	anti-parallel
Strand 3	A	60	68	anti-parallel
Strand 4	A	106	109	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	151	152	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	273	277	anti-parallel
Strand 3	A	300	305	anti-parallel
Strand 4	A	311	317	anti-parallel
Strand 5	A	330	331	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	292	293	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	3	14	anti-parallel
Strand 3	B	75	84	anti-parallel
Strand 4	B	91	99	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	38	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	60	68	anti-parallel
Strand 4	B	106	109	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	151	152	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	273	277	anti-parallel
Strand 3	B	300	305	anti-parallel
Strand 4	B	311	317	anti-parallel
Strand 5	B	330	331	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	292	293	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	3	14	anti-parallel
Strand 3	C	75	84	anti-parallel
Strand 4	C	91	99	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	38	first strand
Strand 2	C	21	28	anti-parallel
Strand 3	C	60	68	anti-parallel
Strand 4	C	106	109	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	151	152	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	273	277	anti-parallel
Strand 3	C	300	305	anti-parallel
Strand 4	C	311	317	anti-parallel
Strand 5	C	330	331	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	292	293	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	3	14	anti-parallel
Strand 3	D	75	84	anti-parallel
Strand 4	D	92	99	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	38	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	60	68	anti-parallel
Strand 4	D	106	109	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	151	152	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	273	277	anti-parallel
Strand 3	D	300	305	anti-parallel
Strand 4	D	311	317	anti-parallel
Strand 5	D	330	331	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	289	first strand
Strand 2	D	292	293	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	52	first strand
Strand 2	E	3	14	anti-parallel
Strand 3	E	75	84	anti-parallel
Strand 4	E	91	99	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	38	first strand
Strand 2	E	21	28	anti-parallel
Strand 3	E	60	68	anti-parallel
Strand 4	E	106	109	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	151	152	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	243	first strand
Strand 2	E	273	277	anti-parallel
Strand 3	E	300	305	anti-parallel
Strand 4	E	311	317	anti-parallel
Strand 5	E	330	331	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	289	first strand
Strand 2	E	292	293	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	52	first strand
Strand 2	F	3	14	anti-parallel
Strand 3	F	75	84	anti-parallel
Strand 4	F	91	99	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	38	first strand
Strand 2	F	21	28	anti-parallel
Strand 3	F	60	68	anti-parallel
Strand 4	F	106	109	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	142	first strand
Strand 2	F	151	152	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	243	first strand
Strand 2	F	273	277	anti-parallel
Strand 3	F	300	305	anti-parallel
Strand 4	F	311	317	anti-parallel
Strand 5	F	330	331	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	288	289	first strand
Strand 2	F	292	293	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHD