Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHE entry

There are 4 chains in PDB entry 8GHE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 2	ILE 663
C	GLY 2	ILE 663
D	GLY 2	ILE 663
A	GLY 2	ILE 663

There are108 helices in PDB entry 8GHE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	122	139	Right-handed alpha
Helix 2	AA2	B	156	160	Right-handed 310
Helix 3	AA3	B	161	165	Right-handed 310
Helix 4	AA4	B	167	192	Right-handed alpha
Helix 5	AA5	B	199	206	Right-handed 310
Helix 6	AA6	B	212	222	Right-handed alpha
Helix 7	AA7	B	224	235	Right-handed alpha
Helix 8	AA8	B	257	270	Right-handed alpha
Helix 9	AA9	B	279	282	Right-handed 310
Helix 10	AB1	B	336	358	Right-handed alpha
Helix 11	AB2	B	364	379	Right-handed alpha
Helix 12	AB3	B	383	390	Right-handed alpha
Helix 13	AB4	B	391	394	Right-handed 310
Helix 14	AB5	B	395	407	Right-handed alpha
Helix 15	AB6	B	413	418	Right-handed alpha
Helix 16	AB7	B	423	435	Right-handed alpha
Helix 17	AB8	B	442	450	Right-handed alpha
Helix 18	AB9	B	458	483	Right-handed alpha
Helix 19	AC1	B	485	491	Right-handed alpha
Helix 20	AC2	B	492	504	Right-handed alpha
Helix 21	AC3	B	521	537	Right-handed alpha
Helix 22	AC4	B	537	545	Right-handed alpha
Helix 23	AC5	B	546	552	Right-handed alpha
Helix 24	AC6	B	553	557	Right-handed 310
Helix 25	AC7	B	573	581	Right-handed alpha
Helix 26	AC8	B	583	599	Right-handed alpha
Helix 27	AC9	B	617	643	Right-handed alpha
Helix 28	AD1	C	122	139	Right-handed alpha
Helix 29	AD2	C	156	160	Right-handed 310
Helix 30	AD3	C	161	165	Right-handed 310
Helix 31	AD4	C	167	192	Right-handed alpha
Helix 32	AD5	C	199	206	Right-handed 310
Helix 33	AD6	C	212	222	Right-handed alpha
Helix 34	AD7	C	224	235	Right-handed alpha
Helix 35	AD8	C	257	270	Right-handed alpha
Helix 36	AD9	C	279	282	Right-handed 310
Helix 37	AE1	C	336	358	Right-handed alpha
Helix 38	AE2	C	364	379	Right-handed alpha
Helix 39	AE3	C	383	390	Right-handed alpha
Helix 40	AE4	C	391	394	Right-handed 310
Helix 41	AE5	C	395	407	Right-handed alpha
Helix 42	AE6	C	412	418	Right-handed alpha
Helix 43	AE7	C	423	435	Right-handed alpha
Helix 44	AE8	C	442	450	Right-handed alpha
Helix 45	AE9	C	458	483	Right-handed alpha
Helix 46	AF1	C	485	491	Right-handed alpha
Helix 47	AF2	C	492	504	Right-handed alpha
Helix 48	AF3	C	521	537	Right-handed alpha
Helix 49	AF4	C	537	545	Right-handed alpha
Helix 50	AF5	C	546	552	Right-handed alpha
Helix 51	AF6	C	553	557	Right-handed 310
Helix 52	AF7	C	573	581	Right-handed alpha
Helix 53	AF8	C	583	599	Right-handed alpha
Helix 54	AF9	C	617	644	Right-handed alpha
Helix 55	AG1	D	122	139	Right-handed alpha
Helix 56	AG2	D	156	160	Right-handed 310
Helix 57	AG3	D	161	165	Right-handed 310
Helix 58	AG4	D	167	192	Right-handed alpha
Helix 59	AG5	D	199	206	Right-handed 310
Helix 60	AG6	D	212	222	Right-handed alpha
Helix 61	AG7	D	224	235	Right-handed alpha
Helix 62	AG8	D	257	270	Right-handed alpha
Helix 63	AG9	D	279	282	Right-handed 310
Helix 64	AH1	D	336	358	Right-handed alpha
Helix 65	AH2	D	364	379	Right-handed alpha
Helix 66	AH3	D	383	390	Right-handed alpha
Helix 67	AH4	D	395	407	Right-handed alpha
Helix 68	AH5	D	412	418	Right-handed alpha
Helix 69	AH6	D	423	435	Right-handed alpha
Helix 70	AH7	D	442	450	Right-handed alpha
Helix 71	AH8	D	458	483	Right-handed alpha
Helix 72	AH9	D	485	491	Right-handed alpha
Helix 73	AI1	D	492	504	Right-handed alpha
Helix 74	AI2	D	521	537	Right-handed alpha
Helix 75	AI3	D	537	545	Right-handed alpha
Helix 76	AI4	D	546	552	Right-handed alpha
Helix 77	AI5	D	553	557	Right-handed 310
Helix 78	AI6	D	573	581	Right-handed alpha
Helix 79	AI7	D	583	599	Right-handed alpha
Helix 80	AI8	D	617	644	Right-handed alpha
Helix 81	AI9	A	122	139	Right-handed alpha
Helix 82	AJ1	A	156	160	Right-handed 310
Helix 83	AJ2	A	161	165	Right-handed 310
Helix 84	AJ3	A	167	192	Right-handed alpha
Helix 85	AJ4	A	199	206	Right-handed 310
Helix 86	AJ5	A	212	222	Right-handed alpha
Helix 87	AJ6	A	224	235	Right-handed alpha
Helix 88	AJ7	A	257	271	Right-handed alpha
Helix 89	AJ8	A	279	282	Right-handed 310
Helix 90	AJ9	A	336	358	Right-handed alpha
Helix 91	AK1	A	364	379	Right-handed alpha
Helix 92	AK2	A	383	390	Right-handed alpha
Helix 93	AK3	A	391	394	Right-handed 310
Helix 94	AK4	A	395	407	Right-handed alpha
Helix 95	AK5	A	412	418	Right-handed alpha
Helix 96	AK6	A	423	435	Right-handed alpha
Helix 97	AK7	A	442	450	Right-handed alpha
Helix 98	AK8	A	458	483	Right-handed alpha
Helix 99	AK9	A	485	491	Right-handed alpha
Helix 100	AL1	A	492	504	Right-handed alpha
Helix 101	AL2	A	509	514	Right-handed 310
Helix 102	AL3	A	521	537	Right-handed alpha
Helix 103	AL4	A	537	545	Right-handed alpha
Helix 104	AL5	A	546	552	Right-handed alpha
Helix 105	AL6	A	553	557	Right-handed 310
Helix 106	AL7	A	573	581	Right-handed alpha
Helix 107	AL8	A	583	599	Right-handed alpha
Helix 108	AL9	A	617	644	Right-handed alpha

There are 20 sheets in PDB entry 8GHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	3	14	anti-parallel
Strand 3	B	75	84	anti-parallel
Strand 4	B	92	99	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	39	first strand
Strand 2	B	20	28	anti-parallel
Strand 3	B	60	68	anti-parallel
Strand 4	B	106	109	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	151	152	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	273	277	anti-parallel
Strand 3	B	300	305	anti-parallel
Strand 4	B	311	317	anti-parallel
Strand 5	B	330	331	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	292	293	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	3	14	anti-parallel
Strand 3	C	75	84	anti-parallel
Strand 4	C	91	99	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	39	first strand
Strand 2	C	20	28	anti-parallel
Strand 3	C	60	67	anti-parallel
Strand 4	C	106	109	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	151	152	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	273	277	anti-parallel
Strand 3	C	300	305	anti-parallel
Strand 4	C	311	317	anti-parallel
Strand 5	C	330	331	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	292	293	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	3	14	anti-parallel
Strand 3	D	75	84	anti-parallel
Strand 4	D	91	99	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	39	first strand
Strand 2	D	20	28	anti-parallel
Strand 3	D	60	68	anti-parallel
Strand 4	D	106	109	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	151	152	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	273	277	anti-parallel
Strand 3	D	300	305	anti-parallel
Strand 4	D	311	317	anti-parallel
Strand 5	D	330	331	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	289	first strand
Strand 2	D	292	293	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	3	14	anti-parallel
Strand 3	A	75	84	anti-parallel
Strand 4	A	92	99	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	39	first strand
Strand 2	A	20	28	anti-parallel
Strand 3	A	60	67	anti-parallel
Strand 4	A	106	109	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	151	152	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	273	277	anti-parallel
Strand 3	A	300	305	anti-parallel
Strand 4	A	311	317	anti-parallel
Strand 5	A	330	331	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	289	first strand
Strand 2	A	292	293	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHE