Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHF entry

There are 4 chains in PDB entry 8GHF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	UNK 1418
B	GLN 19	UNK 1418
C	GLN 19	UNK 1418
D	GLN 19	UNK 1418

There are172 helices in PDB entry 8GHF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	47	Right-handed alpha
Helix 2	AA2	A	92	106	Right-handed alpha
Helix 3	AA3	A	109	134	Right-handed alpha
Helix 4	AA4	A	148	170	Right-handed alpha
Helix 5	AA5	A	173	179	Right-handed alpha
Helix 6	AA6	A	180	200	Right-handed alpha
Helix 7	AA7	A	207	215	Right-handed 310
Helix 8	AA8	A	216	224	Right-handed alpha
Helix 9	AA9	A	231	260	Right-handed alpha
Helix 10	AB1	A	261	265	Right-handed 310
Helix 11	AB2	A	273	286	Right-handed alpha
Helix 12	AB3	A	297	327	Right-handed alpha
Helix 13	AB4	A	352	364	Right-handed alpha
Helix 14	AB5	A	384	394	Right-handed alpha
Helix 15	AB6	A	407	414	Right-handed alpha
Helix 16	AB7	A	415	419	Right-handed 310
Helix 17	AB8	A	432	451	Right-handed alpha
Helix 18	AB9	A	462	470	Right-handed alpha
Helix 19	AC1	A	486	498	Right-handed alpha
Helix 20	AC2	A	502	509	Right-handed alpha
Helix 21	AC3	A	523	533	Right-handed alpha
Helix 22	AC4	A	549	562	Right-handed alpha
Helix 23	AC5	A	603	609	Right-handed 310
Helix 24	AC6	A	699	703	Right-handed 310
Helix 25	AC7	A	706	713	Right-handed alpha
Helix 26	AC8	A	734	739	Right-handed alpha
Helix 27	AC9	A	740	743	Right-handed 310
Helix 28	AD1	A	747	751	Right-handed 310
Helix 29	AD2	A	759	765	Right-handed alpha
Helix 30	AD3	A	766	770	Right-handed 310
Helix 31	AD4	A	785	792	Right-handed alpha
Helix 32	AD5	A	793	797	Right-handed 310
Helix 33	AD6	A	817	829	Right-handed alpha
Helix 34	AD7	A	872	876	Right-handed 310
Helix 35	AD8	A	884	891	Right-handed 310
Helix 36	AD9	A	902	905	Right-handed 310
Helix 37	AE1	A	906	912	Right-handed alpha
Helix 38	AE2	A	918	921	Right-handed 310
Helix 39	AE3	A	922	930	Right-handed alpha
Helix 40	AE4	A	932	942	Right-handed alpha
Helix 41	AE5	A	946	957	Right-handed alpha
Helix 42	AE6	A	969	973	Right-handed 310
Helix 43	AE7	A	995	1008	Right-handed alpha
Helix 44	AE8	B	21	47	Right-handed alpha
Helix 45	AE9	B	92	106	Right-handed alpha
Helix 46	AF1	B	109	134	Right-handed alpha
Helix 47	AF2	B	148	170	Right-handed alpha
Helix 48	AF3	B	173	179	Right-handed alpha
Helix 49	AF4	B	180	200	Right-handed alpha
Helix 50	AF5	B	207	215	Right-handed 310
Helix 51	AF6	B	216	224	Right-handed alpha
Helix 52	AF7	B	231	260	Right-handed alpha
Helix 53	AF8	B	261	265	Right-handed 310
Helix 54	AF9	B	273	286	Right-handed alpha
Helix 55	AG1	B	297	327	Right-handed alpha
Helix 56	AG2	B	352	364	Right-handed alpha
Helix 57	AG3	B	384	394	Right-handed alpha
Helix 58	AG4	B	407	414	Right-handed alpha
Helix 59	AG5	B	415	419	Right-handed 310
Helix 60	AG6	B	432	451	Right-handed alpha
Helix 61	AG7	B	462	470	Right-handed alpha
Helix 62	AG8	B	486	498	Right-handed alpha
Helix 63	AG9	B	502	509	Right-handed alpha
Helix 64	AH1	B	523	533	Right-handed alpha
Helix 65	AH2	B	549	562	Right-handed alpha
Helix 66	AH3	B	603	609	Right-handed 310
Helix 67	AH4	B	699	703	Right-handed 310
Helix 68	AH5	B	706	713	Right-handed alpha
Helix 69	AH6	B	734	739	Right-handed alpha
Helix 70	AH7	B	740	743	Right-handed 310
Helix 71	AH8	B	747	751	Right-handed 310
Helix 72	AH9	B	759	765	Right-handed alpha
Helix 73	AI1	B	766	770	Right-handed 310
Helix 74	AI2	B	785	792	Right-handed alpha
Helix 75	AI3	B	793	797	Right-handed 310
Helix 76	AI4	B	817	829	Right-handed alpha
Helix 77	AI5	B	872	876	Right-handed 310
Helix 78	AI6	B	884	891	Right-handed 310
Helix 79	AI7	B	902	905	Right-handed 310
Helix 80	AI8	B	906	912	Right-handed alpha
Helix 81	AI9	B	918	921	Right-handed 310
Helix 82	AJ1	B	922	930	Right-handed alpha
Helix 83	AJ2	B	932	942	Right-handed alpha
Helix 84	AJ3	B	946	957	Right-handed alpha
Helix 85	AJ4	B	969	973	Right-handed 310
Helix 86	AJ5	B	995	1008	Right-handed alpha
Helix 87	AJ6	C	21	47	Right-handed alpha
Helix 88	AJ7	C	92	106	Right-handed alpha
Helix 89	AJ8	C	109	134	Right-handed alpha
Helix 90	AJ9	C	148	170	Right-handed alpha
Helix 91	AK1	C	173	179	Right-handed alpha
Helix 92	AK2	C	180	200	Right-handed alpha
Helix 93	AK3	C	207	215	Right-handed 310
Helix 94	AK4	C	216	224	Right-handed alpha
Helix 95	AK5	C	231	260	Right-handed alpha
Helix 96	AK6	C	261	265	Right-handed 310
Helix 97	AK7	C	273	286	Right-handed alpha
Helix 98	AK8	C	297	327	Right-handed alpha
Helix 99	AK9	C	352	364	Right-handed alpha
Helix 100	AL1	C	384	394	Right-handed alpha
Helix 101	AL2	C	407	414	Right-handed alpha
Helix 102	AL3	C	415	419	Right-handed 310
Helix 103	AL4	C	432	451	Right-handed alpha
Helix 104	AL5	C	462	470	Right-handed alpha
Helix 105	AL6	C	486	498	Right-handed alpha
Helix 106	AL7	C	502	509	Right-handed alpha
Helix 107	AL8	C	523	533	Right-handed alpha
Helix 108	AL9	C	549	562	Right-handed alpha
Helix 109	AM1	C	603	609	Right-handed 310
Helix 110	AM2	C	699	703	Right-handed 310
Helix 111	AM3	C	706	713	Right-handed alpha
Helix 112	AM4	C	734	739	Right-handed alpha
Helix 113	AM5	C	740	743	Right-handed 310
Helix 114	AM6	C	747	751	Right-handed 310
Helix 115	AM7	C	759	765	Right-handed alpha
Helix 116	AM8	C	766	770	Right-handed 310
Helix 117	AM9	C	785	792	Right-handed alpha
Helix 118	AN1	C	793	797	Right-handed 310
Helix 119	AN2	C	817	829	Right-handed alpha
Helix 120	AN3	C	872	876	Right-handed 310
Helix 121	AN4	C	884	891	Right-handed 310
Helix 122	AN5	C	902	905	Right-handed 310
Helix 123	AN6	C	906	912	Right-handed alpha
Helix 124	AN7	C	918	921	Right-handed 310
Helix 125	AN8	C	922	930	Right-handed alpha
Helix 126	AN9	C	932	942	Right-handed alpha
Helix 127	AO1	C	946	957	Right-handed alpha
Helix 128	AO2	C	969	973	Right-handed 310
Helix 129	AO3	C	995	1008	Right-handed alpha
Helix 130	AO4	D	21	47	Right-handed alpha
Helix 131	AO5	D	92	106	Right-handed alpha
Helix 132	AO6	D	109	134	Right-handed alpha
Helix 133	AO7	D	148	170	Right-handed alpha
Helix 134	AO8	D	173	179	Right-handed alpha
Helix 135	AO9	D	180	200	Right-handed alpha
Helix 136	AP1	D	207	215	Right-handed 310
Helix 137	AP2	D	216	224	Right-handed alpha
Helix 138	AP3	D	231	260	Right-handed alpha
Helix 139	AP4	D	261	265	Right-handed 310
Helix 140	AP5	D	273	286	Right-handed alpha
Helix 141	AP6	D	297	327	Right-handed alpha
Helix 142	AP7	D	352	364	Right-handed alpha
Helix 143	AP8	D	384	394	Right-handed alpha
Helix 144	AP9	D	407	414	Right-handed alpha
Helix 145	AQ1	D	415	419	Right-handed 310
Helix 146	AQ2	D	432	451	Right-handed alpha
Helix 147	AQ3	D	462	470	Right-handed alpha
Helix 148	AQ4	D	486	498	Right-handed alpha
Helix 149	AQ5	D	502	509	Right-handed alpha
Helix 150	AQ6	D	523	533	Right-handed alpha
Helix 151	AQ7	D	549	562	Right-handed alpha
Helix 152	AQ8	D	603	609	Right-handed 310
Helix 153	AQ9	D	699	703	Right-handed 310
Helix 154	AR1	D	706	713	Right-handed alpha
Helix 155	AR2	D	734	739	Right-handed alpha
Helix 156	AR3	D	740	743	Right-handed 310
Helix 157	AR4	D	747	751	Right-handed 310
Helix 158	AR5	D	759	765	Right-handed alpha
Helix 159	AR6	D	766	770	Right-handed 310
Helix 160	AR7	D	785	792	Right-handed alpha
Helix 161	AR8	D	793	797	Right-handed 310
Helix 162	AR9	D	817	829	Right-handed alpha
Helix 163	AS1	D	872	876	Right-handed 310
Helix 164	AS2	D	884	891	Right-handed 310
Helix 165	AS3	D	902	905	Right-handed 310
Helix 166	AS4	D	906	912	Right-handed alpha
Helix 167	AS5	D	918	921	Right-handed 310
Helix 168	AS6	D	922	930	Right-handed alpha
Helix 169	AS7	D	932	942	Right-handed alpha
Helix 170	AS8	D	946	957	Right-handed alpha
Helix 171	AS9	D	969	973	Right-handed 310
Helix 172	AT1	D	995	1008	Right-handed alpha

There are 24 sheets in PDB entry 8GHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	202	203	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	402	first strand
Strand 2	A	374	379	parallel
Strand 3	A	344	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	455	460	parallel
Strand 6	A	482	485	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	539	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	564	569	anti-parallel
Strand 4	A	579	581	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	687	first strand
Strand 2	A	961	962	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	754	758	parallel
Strand 3	A	719	724	parallel
Strand 4	A	799	804	parallel
Strand 5	A	879	882	parallel
Strand 6	A	914	916	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	981	first strand
Strand 2	A	1048	1053	anti-parallel
Strand 3	A	1010	1017	anti-parallel
Strand 4	A	1031	1035	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	202	203	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	374	379	parallel
Strand 3	B	344	349	parallel
Strand 4	B	421	425	parallel
Strand 5	B	455	460	parallel
Strand 6	B	481	485	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	539	first strand
Strand 2	B	595	599	anti-parallel
Strand 3	B	564	569	anti-parallel
Strand 4	B	579	581	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	687	first strand
Strand 2	B	961	962	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	754	758	parallel
Strand 3	B	719	724	parallel
Strand 4	B	799	804	parallel
Strand 5	B	879	882	parallel
Strand 6	B	914	916	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	976	981	first strand
Strand 2	B	1048	1053	anti-parallel
Strand 3	B	1010	1017	anti-parallel
Strand 4	B	1031	1035	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	202	203	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	374	379	parallel
Strand 3	C	344	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	460	parallel
Strand 6	C	481	485	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	539	first strand
Strand 2	C	595	599	anti-parallel
Strand 3	C	564	569	anti-parallel
Strand 4	C	579	581	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	687	first strand
Strand 2	C	961	962	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	719	724	parallel
Strand 4	C	799	804	parallel
Strand 5	C	879	882	parallel
Strand 6	C	914	916	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	976	981	first strand
Strand 2	C	1048	1053	anti-parallel
Strand 3	C	1010	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	202	203	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	402	first strand
Strand 2	D	374	379	parallel
Strand 3	D	344	349	parallel
Strand 4	D	421	425	parallel
Strand 5	D	455	460	parallel
Strand 6	D	481	485	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	539	first strand
Strand 2	D	595	599	anti-parallel
Strand 3	D	564	569	anti-parallel
Strand 4	D	579	581	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	687	first strand
Strand 2	D	961	962	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	754	758	parallel
Strand 3	D	719	724	parallel
Strand 4	D	799	804	parallel
Strand 5	D	879	882	parallel
Strand 6	D	914	916	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	976	981	first strand
Strand 2	D	1048	1053	anti-parallel
Strand 3	D	1010	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHF