Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHG entry

There are 4 chains in PDB entry 8GHG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	ASP 1056
C	GLN 19	ASP 1056
B	GLN 19	ASP 1056
D	GLN 19	ASP 1056

There are166 helices in PDB entry 8GHG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	30	Right-handed alpha
Helix 2	AA2	A	108	128	Right-handed alpha
Helix 3	AA3	A	129	135	Right-handed alpha
Helix 4	AA4	A	149	170	Right-handed alpha
Helix 5	AA5	A	173	180	Right-handed alpha
Helix 6	AA6	A	180	199	Right-handed alpha
Helix 7	AA7	A	212	216	Right-handed 310
Helix 8	AA8	A	217	224	Right-handed alpha
Helix 9	AA9	A	229	260	Right-handed alpha
Helix 10	AB1	A	273	286	Right-handed alpha
Helix 11	AB2	A	297	319	Right-handed alpha
Helix 12	AB3	A	322	328	Right-handed alpha
Helix 13	AB4	A	352	364	Right-handed alpha
Helix 14	AB5	A	384	394	Right-handed alpha
Helix 15	AB6	A	407	415	Right-handed alpha
Helix 16	AB7	A	432	451	Right-handed alpha
Helix 17	AB8	A	465	471	Right-handed alpha
Helix 18	AB9	A	485	500	Right-handed alpha
Helix 19	AC1	A	502	509	Right-handed alpha
Helix 20	AC2	A	523	533	Right-handed alpha
Helix 21	AC3	A	601	606	Right-handed alpha
Helix 22	AC4	A	607	609	Right-handed 310
Helix 23	AC5	A	699	704	Right-handed alpha
Helix 24	AC6	A	706	713	Right-handed alpha
Helix 25	AC7	A	734	742	Right-handed alpha
Helix 26	AC8	A	747	751	Right-handed 310
Helix 27	AC9	A	759	767	Right-handed alpha
Helix 28	AD1	A	768	770	Right-handed 310
Helix 29	AD2	A	785	792	Right-handed alpha
Helix 30	AD3	A	817	830	Right-handed alpha
Helix 31	AD4	A	872	876	Right-handed 310
Helix 32	AD5	A	884	892	Right-handed 310
Helix 33	AD6	A	909	913	Right-handed 310
Helix 34	AD7	A	918	921	Right-handed 310
Helix 35	AD8	A	922	930	Right-handed alpha
Helix 36	AD9	A	932	942	Right-handed alpha
Helix 37	AE1	A	946	957	Right-handed alpha
Helix 38	AE2	A	996	1008	Right-handed alpha
Helix 39	AE3	C	118	136	Right-handed alpha
Helix 40	AE4	C	147	170	Right-handed alpha
Helix 41	AE5	C	175	180	Right-handed alpha
Helix 42	AE6	C	180	200	Right-handed alpha
Helix 43	AE7	C	209	214	Right-handed alpha
Helix 44	AE8	C	216	225	Right-handed alpha
Helix 45	AE9	C	232	260	Right-handed alpha
Helix 46	AF1	C	273	285	Right-handed alpha
Helix 47	AF2	C	286	288	Right-handed 310
Helix 48	AF3	C	297	310	Right-handed alpha
Helix 49	AF4	C	310	317	Right-handed alpha
Helix 50	AF5	C	318	327	Right-handed alpha
Helix 51	AF6	C	352	364	Right-handed alpha
Helix 52	AF7	C	384	394	Right-handed alpha
Helix 53	AF8	C	407	415	Right-handed alpha
Helix 54	AF9	C	416	419	Right-handed 310
Helix 55	AG1	C	432	451	Right-handed alpha
Helix 56	AG2	C	462	464	Right-handed 310
Helix 57	AG3	C	465	471	Right-handed alpha
Helix 58	AG4	C	485	500	Right-handed alpha
Helix 59	AG5	C	502	509	Right-handed alpha
Helix 60	AG6	C	523	533	Right-handed alpha
Helix 61	AG7	C	549	562	Right-handed alpha
Helix 62	AG8	C	601	607	Right-handed alpha
Helix 63	AG9	C	699	703	Right-handed 310
Helix 64	AH1	C	706	713	Right-handed alpha
Helix 65	AH2	C	733	739	Right-handed alpha
Helix 66	AH3	C	740	743	Right-handed 310
Helix 67	AH4	C	747	751	Right-handed 310
Helix 68	AH5	C	759	768	Right-handed alpha
Helix 69	AH6	C	785	792	Right-handed alpha
Helix 70	AH7	C	817	830	Right-handed alpha
Helix 71	AH8	C	884	891	Right-handed 310
Helix 72	AH9	C	902	905	Right-handed 310
Helix 73	AI1	C	906	912	Right-handed alpha
Helix 74	AI2	C	918	921	Right-handed 310
Helix 75	AI3	C	922	930	Right-handed alpha
Helix 76	AI4	C	932	942	Right-handed alpha
Helix 77	AI5	C	946	957	Right-handed alpha
Helix 78	AI6	C	969	973	Right-handed 310
Helix 79	AI7	C	985	992	Right-handed 310
Helix 80	AI8	C	995	1008	Right-handed alpha
Helix 81	AI9	B	24	30	Right-handed alpha
Helix 82	AJ1	B	109	133	Right-handed alpha
Helix 83	AJ2	B	134	136	Right-handed 310
Helix 84	AJ3	B	147	170	Right-handed alpha
Helix 85	AJ4	B	173	180	Right-handed alpha
Helix 86	AJ5	B	180	200	Right-handed alpha
Helix 87	AJ6	B	207	215	Right-handed 310
Helix 88	AJ7	B	216	224	Right-handed alpha
Helix 89	AJ8	B	230	260	Right-handed alpha
Helix 90	AJ9	B	261	265	Right-handed 310
Helix 91	AK1	B	273	286	Right-handed alpha
Helix 92	AK2	B	297	319	Right-handed alpha
Helix 93	AK3	B	320	327	Right-handed 310
Helix 94	AK4	B	352	364	Right-handed alpha
Helix 95	AK5	B	384	394	Right-handed alpha
Helix 96	AK6	B	407	415	Right-handed alpha
Helix 97	AK7	B	432	451	Right-handed alpha
Helix 98	AK8	B	465	472	Right-handed alpha
Helix 99	AK9	B	485	500	Right-handed alpha
Helix 100	AL1	B	502	510	Right-handed alpha
Helix 101	AL2	B	523	533	Right-handed alpha
Helix 102	AL3	B	549	558	Right-handed alpha
Helix 103	AL4	B	601	606	Right-handed alpha
Helix 104	AL5	B	607	609	Right-handed 310
Helix 105	AL6	B	699	704	Right-handed alpha
Helix 106	AL7	B	706	713	Right-handed alpha
Helix 107	AL8	B	734	742	Right-handed alpha
Helix 108	AL9	B	759	767	Right-handed alpha
Helix 109	AM1	B	768	770	Right-handed 310
Helix 110	AM2	B	785	792	Right-handed alpha
Helix 111	AM3	B	793	797	Right-handed 310
Helix 112	AM4	B	804	808	Right-handed 310
Helix 113	AM5	B	817	829	Right-handed alpha
Helix 114	AM6	B	872	876	Right-handed 310
Helix 115	AM7	B	884	892	Right-handed 310
Helix 116	AM8	B	906	912	Right-handed alpha
Helix 117	AM9	B	918	921	Right-handed 310
Helix 118	AN1	B	922	930	Right-handed alpha
Helix 119	AN2	B	931	941	Right-handed alpha
Helix 120	AN3	B	948	957	Right-handed alpha
Helix 121	AN4	B	996	1007	Right-handed alpha
Helix 122	AN5	D	24	33	Right-handed 310
Helix 123	AN6	D	110	116	Right-handed alpha
Helix 124	AN7	D	118	121	Right-handed 310
Helix 125	AN8	D	122	136	Right-handed alpha
Helix 126	AN9	D	150	171	Right-handed alpha
Helix 127	AO1	D	180	200	Right-handed alpha
Helix 128	AO2	D	207	213	Right-handed 310
Helix 129	AO3	D	214	224	Right-handed alpha
Helix 130	AO4	D	230	260	Right-handed alpha
Helix 131	AO5	D	273	285	Right-handed alpha
Helix 132	AO6	D	297	318	Right-handed alpha
Helix 133	AO7	D	319	327	Right-handed alpha
Helix 134	AO8	D	352	364	Right-handed alpha
Helix 135	AO9	D	384	394	Right-handed alpha
Helix 136	AP1	D	407	415	Right-handed alpha
Helix 137	AP2	D	416	419	Right-handed 310
Helix 138	AP3	D	432	451	Right-handed alpha
Helix 139	AP4	D	462	464	Right-handed 310
Helix 140	AP5	D	465	471	Right-handed alpha
Helix 141	AP6	D	486	500	Right-handed alpha
Helix 142	AP7	D	502	509	Right-handed alpha
Helix 143	AP8	D	523	533	Right-handed alpha
Helix 144	AP9	D	549	562	Right-handed alpha
Helix 145	AQ1	D	601	606	Right-handed alpha
Helix 146	AQ2	D	607	609	Right-handed 310
Helix 147	AQ3	D	699	703	Right-handed 310
Helix 148	AQ4	D	706	713	Right-handed alpha
Helix 149	AQ5	D	733	739	Right-handed alpha
Helix 150	AQ6	D	740	743	Right-handed 310
Helix 151	AQ7	D	747	751	Right-handed 310
Helix 152	AQ8	D	759	767	Right-handed alpha
Helix 153	AQ9	D	768	770	Right-handed 310
Helix 154	AR1	D	785	792	Right-handed alpha
Helix 155	AR2	D	817	830	Right-handed alpha
Helix 156	AR3	D	884	892	Right-handed 310
Helix 157	AR4	D	902	905	Right-handed 310
Helix 158	AR5	D	906	912	Right-handed alpha
Helix 159	AR6	D	918	920	Right-handed 310
Helix 160	AR7	D	921	930	Right-handed alpha
Helix 161	AR8	D	932	942	Right-handed alpha
Helix 162	AR9	D	946	957	Right-handed alpha
Helix 163	AS1	D	969	974	Right-handed 310
Helix 164	AS2	D	985	989	Right-handed 310
Helix 165	AS3	D	995	1008	Right-handed alpha
Helix 166	AS4	D	1019	1021	Right-handed 310

There are 20 sheets in PDB entry 8GHG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	374	378	parallel
Strand 3	A	344	349	parallel
Strand 4	A	421	425	parallel
Strand 5	A	455	458	parallel
Strand 6	A	482	483	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	564	565	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	780	first strand
Strand 2	A	754	758	parallel
Strand 3	A	719	722	parallel
Strand 4	A	799	802	parallel
Strand 5	A	878	882	parallel
Strand 6	A	915	916	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1017	first strand
Strand 2	A	1031	1034	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	374	378	parallel
Strand 3	C	344	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	458	parallel
Strand 6	C	482	483	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	538	first strand
Strand 2	C	596	599	anti-parallel
Strand 3	C	564	565	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	569	first strand
Strand 2	C	579	580	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	754	758	parallel
Strand 3	C	719	722	parallel
Strand 4	C	799	802	parallel
Strand 5	C	878	882	parallel
Strand 6	C	914	916	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	976	981	first strand
Strand 2	C	1048	1053	anti-parallel
Strand 3	C	1010	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	B	201	202	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	402	first strand
Strand 2	B	374	379	parallel
Strand 3	B	344	349	parallel
Strand 4	B	421	425	parallel
Strand 5	B	455	458	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	594	599	anti-parallel
Strand 3	B	564	568	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	754	758	parallel
Strand 3	B	719	722	parallel
Strand 4	B	799	802	parallel
Strand 5	B	878	882	parallel
Strand 6	B	914	916	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	975	976	first strand
Strand 2	B	1051	1052	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1017	first strand
Strand 2	B	1031	1034	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	402	first strand
Strand 2	D	373	379	parallel
Strand 3	D	343	349	parallel
Strand 4	D	422	425	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	460	first strand
Strand 2	D	483	485	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	539	first strand
Strand 2	D	595	599	anti-parallel
Strand 3	D	564	569	anti-parallel
Strand 4	D	579	581	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	754	758	parallel
Strand 3	D	719	723	parallel
Strand 4	D	799	802	parallel
Strand 5	D	879	882	parallel
Strand 6	D	914	916	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	976	981	first strand
Strand 2	D	1048	1053	anti-parallel
Strand 3	D	1010	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHG