Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GHI entry

There is 1 chain in PDB entry 8GHI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 36GLU 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8GHI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 72Right-handed alpha
Helix 2
AA2
A
106 110Right-handed 310
Helix 3
AA3
A
111 116Right-handed alpha
Helix 4
AA4
A
143 151Right-handed alpha
Helix 5
AA5
A
166 183Right-handed alpha
Helix 6
AA6
A
195 207Right-handed alpha
Helix 7
AA7
A
215 230Right-handed alpha
Helix 8
AA8
A
231 233Right-handed 310
Helix 9
AA9
A
254 264Right-handed alpha
Helix 10
AB1
A
275 286Right-handed alpha
Helix 11
AB2
A
295 305Right-handed alpha
Helix 12
AB3
A
306 310Right-handed 310
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There are 3 sheets in PDB entry 8GHI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
76 83anti-parallel
Strand 3
A
155 160parallel
Strand 4
A
189 192parallel
Strand 5
A
211 212parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
76 83anti-parallel
Strand 3
A
47 51parallel
Strand 4
A
289 292parallel
Strand 5
A
266 271parallel
Strand 6
A
239 244parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
250 251anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il