Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHL entry

There are 8 chains in PDB entry 8GHL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 409	LYS 840
J	ILE 11	PRO 903
B	THR 433	SER 875
C	LYS 473	SER 875
G	ASP 409	LYS 840
H	THR 433	SER 875
I	LYS 473	SER 875
D	ILE 11	PRO 903

There are136 helices in PDB entry 8GHL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	418	436	Right-handed alpha
Helix 2	AA2	A	545	551	Right-handed alpha
Helix 3	AA3	A	626	632	Right-handed alpha
Helix 4	AA4	A	672	676	Right-handed 310
Helix 5	AA5	A	678	685	Right-handed alpha
Helix 6	AA6	A	784	789	Right-handed alpha
Helix 7	AA7	J	12	43	Right-handed alpha
Helix 8	AA8	J	45	57	Right-handed alpha
Helix 9	AA9	J	74	100	Right-handed alpha
Helix 10	AB1	J	101	103	Right-handed 310
Helix 11	AB2	J	104	126	Right-handed alpha
Helix 12	AB3	J	129	143	Right-handed alpha
Helix 13	AB4	J	145	158	Right-handed alpha
Helix 14	AB5	J	159	167	Right-handed alpha
Helix 15	AB6	J	175	192	Right-handed alpha
Helix 16	AB7	J	201	206	Right-handed alpha
Helix 17	AB8	J	222	240	Right-handed alpha
Helix 18	AB9	J	253	265	Right-handed alpha
Helix 19	AC1	J	269	276	Right-handed alpha
Helix 20	AC2	J	279	284	Right-handed 310
Helix 21	AC3	J	376	394	Right-handed alpha
Helix 22	AC4	J	401	412	Right-handed alpha
Helix 23	AC5	J	420	433	Right-handed alpha
Helix 24	AC6	J	435	443	Right-handed alpha
Helix 25	AC7	J	453	459	Right-handed alpha
Helix 26	AC8	J	463	467	Right-handed 310
Helix 27	AC9	J	485	499	Right-handed alpha
Helix 28	AD1	J	501	515	Right-handed alpha
Helix 29	AD2	J	524	529	Right-handed alpha
Helix 30	AD3	J	532	546	Right-handed alpha
Helix 31	AD4	J	546	557	Right-handed alpha
Helix 32	AD5	J	561	587	Right-handed alpha
Helix 33	AD6	J	593	618	Right-handed alpha
Helix 34	AD7	J	622	641	Right-handed alpha
Helix 35	AD8	J	646	662	Right-handed alpha
Helix 36	AD9	J	680	703	Right-handed alpha
Helix 37	AE1	J	708	728	Right-handed alpha
Helix 38	AE2	J	737	745	Right-handed alpha
Helix 39	AE3	J	748	765	Right-handed alpha
Helix 40	AE4	J	768	788	Right-handed alpha
Helix 41	AE5	J	789	794	Right-handed alpha
Helix 42	AE6	J	796	825	Right-handed alpha
Helix 43	AE7	J	835	862	Right-handed alpha
Helix 44	AE8	J	867	872	Right-handed alpha
Helix 45	AE9	J	872	902	Right-handed alpha
Helix 46	AF1	B	487	492	Right-handed 310
Helix 47	AF2	B	631	635	Right-handed 310
Helix 48	AF3	B	688	693	Right-handed alpha
Helix 49	AF4	B	718	730	Right-handed alpha
Helix 50	AF5	B	734	751	Right-handed alpha
Helix 51	AF6	B	752	765	Right-handed alpha
Helix 52	AF7	B	771	791	Right-handed alpha
Helix 53	AF8	B	793	812	Right-handed alpha
Helix 54	AF9	B	813	826	Right-handed alpha
Helix 55	AG1	B	840	855	Right-handed alpha
Helix 56	AG2	B	860	871	Right-handed alpha
Helix 57	AG3	C	539	542	Right-handed 310
Helix 58	AG4	C	631	634	Right-handed 310
Helix 59	AG5	C	688	693	Right-handed alpha
Helix 60	AG6	C	701	705	Right-handed 310
Helix 61	AG7	C	734	745	Right-handed alpha
Helix 62	AG8	C	748	765	Right-handed alpha
Helix 63	AG9	C	771	791	Right-handed alpha
Helix 64	AH1	C	793	812	Right-handed alpha
Helix 65	AH2	C	813	826	Right-handed alpha
Helix 66	AH3	C	834	838	Right-handed 310
Helix 67	AH4	C	839	854	Right-handed alpha
Helix 68	AH5	C	855	857	Right-handed 310
Helix 69	AH6	C	860	871	Right-handed alpha
Helix 70	AH7	G	418	436	Right-handed alpha
Helix 71	AH8	G	545	551	Right-handed alpha
Helix 72	AH9	G	626	632	Right-handed alpha
Helix 73	AI1	G	672	676	Right-handed 310
Helix 74	AI2	G	678	685	Right-handed alpha
Helix 75	AI3	G	784	789	Right-handed alpha
Helix 76	AI4	H	487	492	Right-handed 310
Helix 77	AI5	H	688	693	Right-handed alpha
Helix 78	AI6	H	718	730	Right-handed alpha
Helix 79	AI7	H	734	751	Right-handed alpha
Helix 80	AI8	H	752	765	Right-handed alpha
Helix 81	AI9	H	771	791	Right-handed alpha
Helix 82	AJ1	H	793	812	Right-handed alpha
Helix 83	AJ2	H	813	826	Right-handed alpha
Helix 84	AJ3	H	840	855	Right-handed alpha
Helix 85	AJ4	H	857	859	Right-handed 310
Helix 86	AJ5	H	860	871	Right-handed alpha
Helix 87	AJ6	I	539	542	Right-handed 310
Helix 88	AJ7	I	631	634	Right-handed 310
Helix 89	AJ8	I	635	640	Right-handed alpha
Helix 90	AJ9	I	686	693	Right-handed alpha
Helix 91	AK1	I	734	744	Right-handed alpha
Helix 92	AK2	I	748	765	Right-handed alpha
Helix 93	AK3	I	771	791	Right-handed alpha
Helix 94	AK4	I	793	812	Right-handed alpha
Helix 95	AK5	I	813	826	Right-handed alpha
Helix 96	AK6	I	840	855	Right-handed alpha
Helix 97	AK7	I	861	871	Right-handed alpha
Helix 98	AK8	D	12	43	Right-handed alpha
Helix 99	AK9	D	45	58	Right-handed alpha
Helix 100	AL1	D	74	100	Right-handed alpha
Helix 101	AL2	D	106	126	Right-handed alpha
Helix 102	AL3	D	129	143	Right-handed alpha
Helix 103	AL4	D	145	158	Right-handed alpha
Helix 104	AL5	D	162	168	Right-handed alpha
Helix 105	AL6	D	175	192	Right-handed alpha
Helix 106	AL7	D	200	206	Right-handed alpha
Helix 107	AL8	D	207	211	Right-handed 310
Helix 108	AL9	D	222	240	Right-handed alpha
Helix 109	AM1	D	253	265	Right-handed alpha
Helix 110	AM2	D	269	276	Right-handed alpha
Helix 111	AM3	D	279	284	Right-handed 310
Helix 112	AM4	D	376	394	Right-handed alpha
Helix 113	AM5	D	401	411	Right-handed alpha
Helix 114	AM6	D	420	433	Right-handed alpha
Helix 115	AM7	D	435	443	Right-handed alpha
Helix 116	AM8	D	453	459	Right-handed alpha
Helix 117	AM9	D	487	499	Right-handed alpha
Helix 118	AN1	D	501	514	Right-handed alpha
Helix 119	AN2	D	525	529	Right-handed alpha
Helix 120	AN3	D	532	557	Right-handed alpha
Helix 121	AN4	D	561	587	Right-handed alpha
Helix 122	AN5	D	593	618	Right-handed alpha
Helix 123	AN6	D	622	641	Right-handed alpha
Helix 124	AN7	D	646	662	Right-handed alpha
Helix 125	AN8	D	680	698	Right-handed alpha
Helix 126	AN9	D	699	701	Right-handed 310
Helix 127	AO1	D	708	719	Right-handed alpha
Helix 128	AO2	D	719	728	Right-handed alpha
Helix 129	AO3	D	737	744	Right-handed alpha
Helix 130	AO4	D	748	764	Right-handed alpha
Helix 131	AO5	D	768	788	Right-handed alpha
Helix 132	AO6	D	789	794	Right-handed alpha
Helix 133	AO7	D	796	825	Right-handed alpha
Helix 134	AO8	D	835	862	Right-handed alpha
Helix 135	AO9	D	867	872	Right-handed alpha
Helix 136	AP1	D	872	902	Right-handed alpha

There are 31 sheets in PDB entry 8GHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	497	first strand
Strand 2	A	565	567	anti-parallel
Strand 3	B	646	647	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	657	first strand
Strand 2	A	662	668	anti-parallel
Strand 3	A	687	692	anti-parallel
Strand 4	A	697	703	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	712	first strand
Strand 2	A	718	723	anti-parallel
Strand 3	A	727	732	anti-parallel
Strand 4	A	742	743	anti-parallel
Strand 5	C	680	685	anti-parallel
Strand 6	C	671	675	anti-parallel
Strand 7	C	662	665	anti-parallel
Strand 8	C	653	656	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	748	754	first strand
Strand 2	A	757	762	anti-parallel
Strand 3	A	766	771	anti-parallel
Strand 4	A	776	783	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	810	first strand
Strand 2	A	815	821	anti-parallel
Strand 3	A	825	829	anti-parallel
Strand 4	A	836	840	anti-parallel
Strand 5	B	588	589	anti-parallel
Strand 6	B	573	577	anti-parallel
Strand 7	B	565	569	anti-parallel
Strand 8	B	555	560	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	244	249	first strand
Strand 2	J	290	295	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	499	500	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	508	first strand
Strand 2	B	516	521	anti-parallel
Strand 3	B	531	539	anti-parallel
Strand 4	B	542	551	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	600	first strand
Strand 2	B	603	608	anti-parallel
Strand 3	B	612	617	anti-parallel
Strand 4	B	622	623	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	600	first strand
Strand 2	B	603	608	anti-parallel
Strand 3	B	612	617	anti-parallel
Strand 4	B	628	629	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	656	first strand
Strand 2	B	662	666	anti-parallel
Strand 3	B	671	675	anti-parallel
Strand 4	B	680	685	anti-parallel
Strand 5	C	588	589	anti-parallel
Strand 6	C	573	577	anti-parallel
Strand 7	C	565	569	anti-parallel
Strand 8	C	555	560	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	496	first strand
Strand 2	C	646	647	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	508	first strand
Strand 2	C	516	521	anti-parallel
Strand 3	C	531	537	anti-parallel
Strand 4	C	544	551	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	600	first strand
Strand 2	C	603	608	anti-parallel
Strand 3	C	612	617	anti-parallel
Strand 4	C	622	623	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	600	first strand
Strand 2	C	603	608	anti-parallel
Strand 3	C	612	617	anti-parallel
Strand 4	C	628	629	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	495	497	first strand
Strand 2	G	565	567	anti-parallel
Strand 3	H	646	647	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	651	657	first strand
Strand 2	G	662	668	anti-parallel
Strand 3	G	687	692	anti-parallel
Strand 4	G	697	703	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	707	712	first strand
Strand 2	G	718	723	anti-parallel
Strand 3	G	727	732	anti-parallel
Strand 4	G	742	743	anti-parallel
Strand 5	I	680	685	anti-parallel
Strand 6	I	671	675	anti-parallel
Strand 7	I	662	666	anti-parallel
Strand 8	I	651	656	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	748	754	first strand
Strand 2	G	757	762	anti-parallel
Strand 3	G	767	771	anti-parallel
Strand 4	G	776	780	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	804	810	first strand
Strand 2	G	815	820	anti-parallel
Strand 3	G	826	830	anti-parallel
Strand 4	G	835	840	anti-parallel
Strand 5	H	588	589	anti-parallel
Strand 6	H	573	577	anti-parallel
Strand 7	H	565	569	anti-parallel
Strand 8	H	555	560	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	441	442	first strand
Strand 2	H	499	500	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	505	508	first strand
Strand 2	H	516	521	anti-parallel
Strand 3	H	531	537	anti-parallel
Strand 4	H	545	551	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	594	600	first strand
Strand 2	H	603	608	anti-parallel
Strand 3	H	612	617	anti-parallel
Strand 4	H	622	623	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	594	600	first strand
Strand 2	H	603	608	anti-parallel
Strand 3	H	612	617	anti-parallel
Strand 4	H	628	629	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	651	656	first strand
Strand 2	H	662	666	anti-parallel
Strand 3	H	671	674	anti-parallel
Strand 4	H	681	685	anti-parallel
Strand 5	I	588	589	anti-parallel
Strand 6	I	573	577	anti-parallel
Strand 7	I	565	568	anti-parallel
Strand 8	I	557	560	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	495	496	first strand
Strand 2	I	646	647	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	505	508	first strand
Strand 2	I	516	521	anti-parallel
Strand 3	I	531	537	anti-parallel
Strand 4	I	544	551	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	594	600	first strand
Strand 2	I	603	608	anti-parallel
Strand 3	I	612	617	anti-parallel
Strand 4	I	622	623	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	594	600	first strand
Strand 2	I	603	608	anti-parallel
Strand 3	I	612	617	anti-parallel
Strand 4	I	628	629	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	249	first strand
Strand 2	D	290	295	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	516	518	first strand
Strand 2	D	523	524	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHL