Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHM entry

There are 9 chains in PDB entry 8GHM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 500
M	LYS 65	SER 136
N	ASN 26	GLY 103
O	MET 1	ASP 154
J	MET 1	ASN 10
D	MET 1	ASN 10
G	MET 1	GLY 407
F	ILE 452	PHE 598
L	ILE 452	PHE 598

There are 25 helices in PDB entry 8GHM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	59	Right-handed alpha
Helix 2	AA2	A	65	69	Right-handed 310
Helix 3	AA3	A	223	227	Right-handed 310
Helix 4	AA4	A	395	402	Right-handed alpha
Helix 5	AA5	A	403	407	Right-handed 310
Helix 6	AA6	M	66	80	Right-handed alpha
Helix 7	AA7	M	86	115	Right-handed alpha
Helix 8	AA8	M	121	132	Right-handed alpha
Helix 9	AA9	N	26	30	Right-handed 310
Helix 10	AB1	N	31	42	Right-handed alpha
Helix 11	AB2	N	50	77	Right-handed alpha
Helix 12	AB3	N	83	94	Right-handed alpha
Helix 13	AB4	O	85	90	Right-handed alpha
Helix 14	AB5	O	119	125	Right-handed alpha
Helix 15	AB6	O	131	133	Right-handed 310
Helix 16	AB7	G	46	59	Right-handed alpha
Helix 17	AB8	G	65	69	Right-handed 310
Helix 18	AB9	G	223	227	Right-handed 310
Helix 19	AC1	G	395	402	Right-handed alpha
Helix 20	AC2	G	403	407	Right-handed 310
Helix 21	AC3	F	463	467	Right-handed 310
Helix 22	AC4	F	477	486	Right-handed alpha
Helix 23	AC5	L	463	467	Right-handed 310
Helix 24	AC6	L	477	486	Right-handed alpha
Helix 25	AC7	L	578	585	Right-handed alpha

There are 21 sheets in PDB entry 8GHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	364	first strand
Strand 2	A	370	375	anti-parallel
Strand 3	A	380	384	anti-parallel
Strand 4	A	2	4	anti-parallel
Strand 5	F	453	455	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	16	17	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	25	first strand
Strand 2	A	31	36	anti-parallel
Strand 3	A	41	45	anti-parallel
Strand 4	A	73	75	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	87	first strand
Strand 2	A	94	98	anti-parallel
Strand 3	A	103	109	anti-parallel
Strand 4	A	126	133	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	145	first strand
Strand 2	A	151	156	anti-parallel
Strand 3	A	161	165	anti-parallel
Strand 4	A	171	175	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	187	first strand
Strand 2	A	193	198	anti-parallel
Strand 3	A	203	209	anti-parallel
Strand 4	A	215	222	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	246	253	anti-parallel
Strand 3	A	258	264	anti-parallel
Strand 4	A	273	275	anti-parallel
Strand 5	F	595	597	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	393	first strand
Strand 2	A	281	292	anti-parallel
Strand 3	A	325	332	anti-parallel
Strand 4	A	337	341	anti-parallel
Strand 5	A	349	352	anti-parallel
Strand 6	F	473	476	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	493	496	anti-parallel
Strand 3	O	54	62	parallel
Strand 4	O	38	45	anti-parallel
Strand 5	O	92	101	anti-parallel
Strand 6	O	104	117	anti-parallel
Strand 7	O	135	139	anti-parallel
Strand 8	O	16	17	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	493	496	anti-parallel
Strand 3	O	54	62	parallel
Strand 4	O	38	45	anti-parallel
Strand 5	O	92	101	anti-parallel
Strand 6	O	104	117	anti-parallel
Strand 7	O	145	148	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	84	85	first strand
Strand 2	N	81	82	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	119	120	first strand
Strand 2	N	46	47	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	11	first strand
Strand 2	O	22	30	anti-parallel
Strand 3	O	68	76	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	359	364	first strand
Strand 2	G	370	375	anti-parallel
Strand 3	G	380	384	anti-parallel
Strand 4	G	2	4	anti-parallel
Strand 5	L	453	455	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	16	17	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	25	first strand
Strand 2	G	31	36	anti-parallel
Strand 3	G	41	45	anti-parallel
Strand 4	G	73	75	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	87	first strand
Strand 2	G	94	98	anti-parallel
Strand 3	G	103	109	anti-parallel
Strand 4	G	126	133	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	140	145	first strand
Strand 2	G	151	156	anti-parallel
Strand 3	G	161	165	anti-parallel
Strand 4	G	171	175	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	182	187	first strand
Strand 2	G	193	198	anti-parallel
Strand 3	G	203	209	anti-parallel
Strand 4	G	215	222	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	240	first strand
Strand 2	G	246	253	anti-parallel
Strand 3	G	258	264	anti-parallel
Strand 4	G	272	275	anti-parallel
Strand 5	L	595	597	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	392	393	first strand
Strand 2	G	281	292	anti-parallel
Strand 3	G	325	332	anti-parallel
Strand 4	G	337	341	anti-parallel
Strand 5	G	349	352	anti-parallel
Strand 6	L	473	476	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHM