Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GHP entry

There are 3 chains in PDB entry 8GHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ARG 404
H
 GLU 1SER 121
L
 ASP 1GLN 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8GHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 49Right-handed alpha
Helix 2
AA2
A
74 92Right-handed alpha
Helix 3
AA3
A
125 129Right-handed 310
Helix 4
AA4
A
140 154Right-handed alpha
Helix 5
AA5
A
176 188Right-handed alpha
Helix 6
AA6
A
191 196Right-handed alpha
Helix 7
AA7
A
205 213Right-handed alpha
Helix 8
AA8
A
228 237Right-handed alpha
Helix 9
AA9
A
255 259Right-handed 310
Helix 10
AB1
A
285 291Right-handed alpha
Helix 11
AB2
A
294 320Right-handed alpha
Helix 12
AB3
A
325 330Right-handed alpha
Helix 13
AB4
A
392 396Right-handed 310
Helix 14
AB5
H
28 32Right-handed 310
Helix 15
AB6
H
87 91Right-handed 310
Helix 16
AB7
L
83 87Right-handed 310
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There are 12 sheets in PDB entry 8GHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
11 18anti-parallel
Strand 3
A
55 61parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
11 18anti-parallel
Strand 3
A
95 98parallel
Strand 4
A
118 120parallel
Strand 5
A
134 136parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
166 170parallel
Strand 3
A
222 226parallel
Strand 4
A
246 250parallel
Strand 5
A
271 276parallel
Strand 6
A
355 361anti-parallel
Strand 7
A
368 375anti-parallel
Strand 8
A
380 383anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
343 346anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
116 120parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
44 52anti-parallel
Strand 6
H
57 60anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
116 120parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
107 112anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
74 79anti-parallel
Strand 4
L
66 71anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 11first strand
Strand 2
L
105 107parallel
Strand 3
L
89 94anti-parallel
Strand 4
L
37 42anti-parallel
Strand 5
L
49 53anti-parallel
Strand 6
L
57 58anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 11first strand
Strand 2
L
105 107parallel
Strand 3
L
89 94anti-parallel
Strand 4
L
100 101anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 31first strand
Strand 2
L
34 35anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
109 110first strand
Strand 2
L
115 116anti-parallel
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