Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHR entry

There are 4 chains in PDB entry 8GHR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 187	PHE 921
B	GLU 187	PHE 921
C	VAL 2	SER 124
D	VAL 2	SER 124

There are 60 helices in PDB entry 8GHR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	189	193	Right-handed 310
Helix 2	AA2	A	221	228	Right-handed alpha
Helix 3	AA3	A	229	231	Right-handed 310
Helix 4	AA4	A	232	241	Right-handed alpha
Helix 5	AA5	A	255	266	Right-handed alpha
Helix 6	AA6	A	268	273	Right-handed alpha
Helix 7	AA7	A	292	301	Right-handed 310
Helix 8	AA8	A	305	313	Right-handed alpha
Helix 9	AA9	A	328	332	Right-handed 310
Helix 10	AB1	A	345	358	Right-handed alpha
Helix 11	AB2	A	375	383	Right-handed alpha
Helix 12	AB3	A	386	410	Right-handed alpha
Helix 13	AB4	A	437	442	Right-handed alpha
Helix 14	AB5	A	470	478	Right-handed alpha
Helix 15	AB6	A	541	545	Right-handed 310
Helix 16	AB7	A	568	577	Right-handed alpha
Helix 17	AB8	A	591	595	Right-handed 310
Helix 18	AB9	A	637	642	Right-handed alpha
Helix 19	AC1	A	645	657	Right-handed alpha
Helix 20	AC2	A	721	724	Right-handed 310
Helix 21	AC3	A	725	730	Right-handed alpha
Helix 22	AC4	A	754	758	Right-handed 310
Helix 23	AC5	A	768	789	Right-handed alpha
Helix 24	AC6	A	809	816	Right-handed alpha
Helix 25	AC7	A	844	848	Right-handed 310
Helix 26	AC8	A	873	885	Right-handed alpha
Helix 27	AC9	A	888	897	Right-handed alpha
Helix 28	AD1	A	907	916	Right-handed alpha
Helix 29	AD2	B	189	193	Right-handed 310
Helix 30	AD3	B	221	228	Right-handed alpha
Helix 31	AD4	B	229	231	Right-handed 310
Helix 32	AD5	B	232	241	Right-handed alpha
Helix 33	AD6	B	255	266	Right-handed alpha
Helix 34	AD7	B	268	273	Right-handed alpha
Helix 35	AD8	B	292	301	Right-handed 310
Helix 36	AD9	B	305	313	Right-handed alpha
Helix 37	AE1	B	328	332	Right-handed 310
Helix 38	AE2	B	345	358	Right-handed alpha
Helix 39	AE3	B	375	383	Right-handed alpha
Helix 40	AE4	B	386	410	Right-handed alpha
Helix 41	AE5	B	437	442	Right-handed alpha
Helix 42	AE6	B	470	478	Right-handed alpha
Helix 43	AE7	B	541	545	Right-handed 310
Helix 44	AE8	B	568	577	Right-handed alpha
Helix 45	AE9	B	591	595	Right-handed 310
Helix 46	AF1	B	637	642	Right-handed alpha
Helix 47	AF2	B	645	657	Right-handed alpha
Helix 48	AF3	B	721	724	Right-handed 310
Helix 49	AF4	B	725	730	Right-handed alpha
Helix 50	AF5	B	754	758	Right-handed 310
Helix 51	AF6	B	768	789	Right-handed alpha
Helix 52	AF7	B	809	816	Right-handed alpha
Helix 53	AF8	B	844	848	Right-handed 310
Helix 54	AF9	B	873	885	Right-handed alpha
Helix 55	AG1	B	888	897	Right-handed alpha
Helix 56	AG2	B	907	916	Right-handed alpha
Helix 57	AG3	C	63	66	Right-handed 310
Helix 58	AG4	C	88	92	Right-handed 310
Helix 59	AG5	D	63	66	Right-handed 310
Helix 60	AG6	D	88	92	Right-handed 310

There are 26 sheets in PDB entry 8GHR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	548	551	anti-parallel
Strand 3	A	417	421	anti-parallel
Strand 4	A	212	217	parallel
Strand 5	A	367	372	parallel
Strand 6	A	317	318	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	564	565	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	286	288	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	533	534	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	450	first strand
Strand 2	A	456	459	anti-parallel
Strand 3	A	510	514	anti-parallel
Strand 4	A	487	491	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	664	first strand
Strand 2	A	898	899	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	675	first strand
Strand 2	A	679	684	anti-parallel
Strand 3	A	689	697	anti-parallel
Strand 4	A	791	798	anti-parallel
Strand 5	A	830	838	anti-parallel
Strand 6	A	851	859	anti-parallel
Strand 7	A	886	887	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	703	first strand
Strand 2	A	745	746	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	738	first strand
Strand 2	A	763	765	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	818	820	first strand
Strand 2	A	823	825	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	548	551	anti-parallel
Strand 3	B	417	421	anti-parallel
Strand 4	B	212	217	parallel
Strand 5	B	367	372	parallel
Strand 6	B	317	318	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	564	565	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	286	288	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	B	533	534	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	450	first strand
Strand 2	B	456	459	anti-parallel
Strand 3	B	510	514	anti-parallel
Strand 4	B	487	491	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	664	first strand
Strand 2	B	898	899	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	675	first strand
Strand 2	B	679	684	anti-parallel
Strand 3	B	689	697	anti-parallel
Strand 4	B	791	798	anti-parallel
Strand 5	B	830	838	anti-parallel
Strand 6	B	851	859	anti-parallel
Strand 7	B	886	887	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	703	first strand
Strand 2	B	745	746	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	738	first strand
Strand 2	B	763	765	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	818	820	first strand
Strand 2	B	823	825	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	79	85	anti-parallel
Strand 4	C	69	74	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	118	122	parallel
Strand 3	C	93	100	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	47	52	anti-parallel
Strand 6	C	59	61	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	118	122	parallel
Strand 3	C	93	100	anti-parallel
Strand 4	C	111	114	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	79	85	anti-parallel
Strand 4	D	69	74	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	47	52	anti-parallel
Strand 6	D	59	61	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	111	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHR