Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GHT entry

There are 2 chains in PDB entry 8GHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6GLY 309
B
 SER 6GLY 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8GHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 22Right-handed alpha
Helix 2
AA2
A
22 50Right-handed alpha
Helix 3
AA3
A
52 76Right-handed alpha
Helix 4
AA4
A
76 81Right-handed alpha
Helix 5
AA5
A
84 120Right-handed alpha
Helix 6
AA6
A
122 146Right-handed alpha
Helix 7
AA7
A
165 189Right-handed alpha
Helix 8
AA8
A
190 192Right-handed 310
Helix 9
AA9
A
193 223Right-handed alpha
Helix 10
AB1
A
228 252Right-handed alpha
Helix 11
AB2
A
256 278Right-handed alpha
Helix 12
AB3
A
286 309Right-handed alpha
Helix 13
AB4
B
7 22Right-handed alpha
Helix 14
AB5
B
22 50Right-handed alpha
Helix 15
AB6
B
52 76Right-handed alpha
Helix 16
AB7
B
76 81Right-handed alpha
Helix 17
AB8
B
84 120Right-handed alpha
Helix 18
AB9
B
122 146Right-handed alpha
Helix 19
AC1
B
165 189Right-handed alpha
Helix 20
AC2
B
190 192Right-handed 310
Helix 21
AC3
B
193 223Right-handed alpha
Helix 22
AC4
B
228 252Right-handed alpha
Helix 23
AC5
B
256 278Right-handed alpha
Helix 24
AC6
B
286 309Right-handed alpha
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There are 2 sheets in PDB entry 8GHT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
156 157anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
156 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il