Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHU entry

There are 16 chains in PDB entry 8GHU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 281
a	A 2	C 1404
a	U 1406	C 1533
c	GLY 1	ILE 206
d	ALA 1	LYS 205
e	GLU 9	LYS 158
f	MET 1	SER 100
g	PRO 1	ALA 151
h	SER 1	ALA 129
l	ALA 1	ALA 123
m	ALA 2	ARG 94
o	SER 2	ARG 89
p	MET 1	ALA 82
q	LYS 3	VAL 82
r	GLU 19	HIS 73
t	ASN 2	ALA 86

There are 70 helices in PDB entry 8GHU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	8	18	Right-handed alpha
Helix 3	AA3	A	25	36	Right-handed alpha
Helix 4	AA4	A	65	70	Right-handed alpha
Helix 5	AA5	A	73	78	Right-handed alpha
Helix 6	AA6	A	88	100	Right-handed alpha
Helix 7	AA7	A	101	103	Right-handed 310
Helix 8	AA8	A	111	115	Right-handed 310
Helix 9	AA9	A	122	127	Right-handed alpha
Helix 10	AB1	A	143	151	Right-handed alpha
Helix 11	AB2	A	162	171	Right-handed alpha
Helix 12	AB3	A	171	176	Right-handed alpha
Helix 13	AB4	A	208	213	Right-handed alpha
Helix 14	AB5	A	218	223	Right-handed alpha
Helix 15	AB6	A	247	255	Right-handed alpha
Helix 16	AB7	c	32	35	Right-handed 310
Helix 17	AB8	c	36	44	Right-handed alpha
Helix 18	AB9	c	82	95	Right-handed alpha
Helix 19	AC1	c	113	123	Right-handed alpha
Helix 20	AC2	c	124	126	Right-handed 310
Helix 21	AC3	c	128	142	Right-handed alpha
Helix 22	AC4	d	6	11	Right-handed alpha
Helix 23	AC5	d	48	65	Right-handed alpha
Helix 24	AC6	d	67	79	Right-handed alpha
Helix 25	AC7	d	84	95	Right-handed alpha
Helix 26	AC8	d	96	101	Right-handed alpha
Helix 27	AC9	d	102	105	Right-handed 310
Helix 28	AD1	d	109	117	Right-handed alpha
Helix 29	AD2	d	151	156	Right-handed alpha
Helix 30	AD3	d	157	159	Right-handed 310
Helix 31	AD4	e	54	68	Right-handed alpha
Helix 32	AD5	e	110	118	Right-handed alpha
Helix 33	AD6	e	131	136	Right-handed alpha
Helix 34	AD7	e	138	143	Right-handed alpha
Helix 35	AD8	e	148	154	Right-handed alpha
Helix 36	AD9	f	17	22	Right-handed alpha
Helix 37	AE1	f	67	75	Right-handed alpha
Helix 38	AE2	f	76	81	Right-handed alpha
Helix 39	AE3	g	59	67	Right-handed alpha
Helix 40	AE4	g	100	107	Right-handed alpha
Helix 41	AE5	g	114	119	Right-handed alpha
Helix 42	AE6	g	137	144	Right-handed alpha
Helix 43	AE7	h	4	20	Right-handed alpha
Helix 44	AE8	h	29	42	Right-handed alpha
Helix 45	AE9	h	87	91	Right-handed 310
Helix 46	AF1	h	93	98	Right-handed 310
Helix 47	AF2	l	2	6	Right-handed 310
Helix 48	AF3	m	44	48	Right-handed 310
Helix 49	AF4	m	49	51	Right-handed 310
Helix 50	AF5	m	52	58	Right-handed alpha
Helix 51	AF6	m	68	73	Right-handed alpha
Helix 52	AF7	m	86	92	Right-handed alpha
Helix 53	AF8	o	8	13	Right-handed alpha
Helix 54	AF9	o	26	41	Right-handed alpha
Helix 55	AG1	o	42	44	Right-handed 310
Helix 56	AG2	o	50	55	Right-handed alpha
Helix 57	AG3	o	56	61	Right-handed alpha
Helix 58	AG4	o	61	68	Right-handed alpha
Helix 59	AG5	o	74	76	Right-handed 310
Helix 60	AG6	o	77	85	Right-handed alpha
Helix 61	AG7	p	53	58	Right-handed alpha
Helix 62	AG8	p	68	75	Right-handed alpha
Helix 63	AG9	r	27	31	Right-handed 310
Helix 64	AH1	r	57	63	Right-handed 310
Helix 65	AH2	t	3	25	Right-handed alpha
Helix 66	AH3	t	25	41	Right-handed alpha
Helix 67	AH4	t	44	49	Right-handed alpha
Helix 68	AH5	t	49	58	Right-handed alpha
Helix 69	AH6	t	69	78	Right-handed alpha
Helix 70	AH7	t	78	86	Right-handed alpha

There are 19 sheets in PDB entry 8GHU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	132	135	parallel
Strand 3	A	199	202	parallel
Strand 4	A	230	231	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	224	225	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	267	first strand
Strand 2	A	276	280	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	19	20	first strand
Strand 2	c	54	57	parallel
Strand 3	c	65	67	anti-parallel
Strand 4	c	100	102	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	148	151	first strand
Strand 2	c	198	202	anti-parallel
Strand 3	c	181	182	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	127	128	first strand
Strand 2	d	122	124	anti-parallel
Strand 3	d	140	144	anti-parallel
Strand 4	d	179	181	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	18	21	first strand
Strand 2	e	30	33	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	35	38	first strand
Strand 2	e	46	49	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	84	88	first strand
Strand 2	e	91	97	anti-parallel
Strand 3	e	122	124	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	84	88	first strand
Strand 2	e	91	97	anti-parallel
Strand 3	e	127	128	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	36	44	first strand
Strand 2	f	58	64	anti-parallel
Strand 3	f	4	8	anti-parallel
Strand 4	f	87	89	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	26	27	first strand
Strand 2	h	57	62	anti-parallel
Strand 3	h	45	50	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	64	65	first strand
Strand 2	h	68	69	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	109	110	first strand
Strand 2	h	100	105	anti-parallel
Strand 3	h	122	128	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	61	63	first strand
Strand 2	l	53	55	anti-parallel
Strand 3	l	29	33	anti-parallel
Strand 4	l	78	83	anti-parallel
Strand 5	l	94	96	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	32	37	first strand
Strand 2	p	17	23	anti-parallel
Strand 3	p	2	8	anti-parallel
Strand 4	p	66	67	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	6	7	first strand
Strand 2	q	56	67	anti-parallel
Strand 3	q	10	12	anti-parallel
Strand 4	q	19	23	anti-parallel
Strand 5	q	43	46	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	6	7	first strand
Strand 2	q	56	67	anti-parallel
Strand 3	q	70	77	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	25	29	first strand
Strand 2	q	36	40	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHU