Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GHX entry

There are 2 chains in PDB entry 8GHX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1PRO 360
B
 SER -2GLU 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8GHX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
38 43Right-handed 310
Helix 3
AA3
A
50 60Right-handed alpha
Helix 4
AA4
A
84 100Right-handed alpha
Helix 5
AA5
A
118 120Right-handed 310
Helix 6
AA6
A
121 140Right-handed alpha
Helix 7
AA7
A
160 164Right-handed 310
Helix 8
AA8
A
168 189Right-handed alpha
Helix 9
AA9
A
190 195Right-handed 310
Helix 10
AB1
A
202 206Right-handed 310
Helix 11
AB2
A
208 214Right-handed alpha
Helix 12
AB3
A
233 238Right-handed alpha
Helix 13
AB4
A
249 267Right-handed alpha
Helix 14
AB5
A
286 304Right-handed alpha
Helix 15
AB6
A
335 347Right-handed alpha
Helix 16
AB7
B
5 11Right-handed alpha
Helix 17
AB8
B
38 43Right-handed 310
Helix 18
AB9
B
50 60Right-handed alpha
Helix 19
AC1
B
84 100Right-handed alpha
Helix 20
AC2
B
123 140Right-handed alpha
Helix 21
AC3
B
160 164Right-handed 310
Helix 22
AC4
B
168 189Right-handed alpha
Helix 23
AC5
B
190 196Right-handed 310
Helix 24
AC6
B
202 206Right-handed 310
Helix 25
AC7
B
208 214Right-handed alpha
Helix 26
AC8
B
233 238Right-handed alpha
Helix 27
AC9
B
249 267Right-handed alpha
Helix 28
AD1
B
286 304Right-handed alpha
Helix 29
AD2
B
335 347Right-handed alpha
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There are 4 sheets in PDB entry 8GHX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
64 67parallel
Strand 3
A
104 108parallel
Strand 4
A
147 150parallel
Strand 5
A
198 200parallel
Strand 6
A
224 229parallel
Strand 7
A
274 279parallel
Strand 8
A
308 310parallel
Strand 9
A
16 18parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
332 333anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
64 69parallel
Strand 3
B
104 109parallel
Strand 4
B
147 150parallel
Strand 5
B
198 200parallel
Strand 6
B
224 229parallel
Strand 7
B
274 279parallel
Strand 8
B
308 310parallel
Strand 9
B
16 18parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 327first strand
Strand 2
B
332 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il