Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHZ entry

There are 8 chains in PDB entry 8GHZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 225	CYS 445
B	THR 225	CYS 445
C	THR 225	CYS 445
D	THR 225	CYS 445
E	THR 225	CYS 445
F	THR 225	CYS 445
G	THR 225	CYS 445
H	THR 225	CYS 445

There are 39 helices in PDB entry 8GHZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	231	236	Right-handed alpha
Helix 2	AA2	A	283	289	Right-handed alpha
Helix 3	AA3	A	300	304	Right-handed 310
Helix 4	AA4	A	395	399	Right-handed alpha
Helix 5	AA5	B	231	236	Right-handed alpha
Helix 6	AA6	B	283	289	Right-handed alpha
Helix 7	AA7	B	300	304	Right-handed 310
Helix 8	AA8	B	395	401	Right-handed alpha
Helix 9	AA9	B	411	415	Right-handed 310
Helix 10	AB1	C	231	236	Right-handed alpha
Helix 11	AB2	C	283	289	Right-handed alpha
Helix 12	AB3	C	300	304	Right-handed 310
Helix 13	AB4	C	395	399	Right-handed alpha
Helix 14	AB5	D	231	236	Right-handed alpha
Helix 15	AB6	D	283	289	Right-handed alpha
Helix 16	AB7	D	300	304	Right-handed 310
Helix 17	AB8	D	361	366	Right-handed alpha
Helix 18	AB9	D	395	399	Right-handed alpha
Helix 19	AC1	D	413	415	Right-handed 310
Helix 20	AC2	E	231	236	Right-handed alpha
Helix 21	AC3	E	283	289	Right-handed alpha
Helix 22	AC4	E	300	304	Right-handed 310
Helix 23	AC5	E	367	371	Right-handed 310
Helix 24	AC6	E	395	400	Right-handed alpha
Helix 25	AC7	F	231	236	Right-handed alpha
Helix 26	AC8	F	283	289	Right-handed alpha
Helix 27	AC9	F	300	304	Right-handed 310
Helix 28	AD1	F	361	365	Right-handed 310
Helix 29	AD2	F	395	401	Right-handed alpha
Helix 30	AD3	F	412	415	Right-handed 310
Helix 31	AD4	G	231	236	Right-handed alpha
Helix 32	AD5	G	283	289	Right-handed alpha
Helix 33	AD6	G	300	304	Right-handed 310
Helix 34	AD7	G	367	369	Right-handed 310
Helix 35	AD8	G	394	400	Right-handed alpha
Helix 36	AD9	H	231	236	Right-handed alpha
Helix 37	AE1	H	283	289	Right-handed alpha
Helix 38	AE2	H	300	304	Right-handed 310
Helix 39	AE3	H	395	399	Right-handed alpha

There are 38 sheets in PDB entry 8GHZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	239	245	anti-parallel
Strand 3	A	276	282	anti-parallel
Strand 4	A	269	270	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	293	296	anti-parallel
Strand 3	A	308	309	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	336	343	anti-parallel
Strand 3	A	329	331	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	336	343	anti-parallel
Strand 3	A	387	394	anti-parallel
Strand 4	A	371	375	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	357	first strand
Strand 2	A	405	411	anti-parallel
Strand 3	A	420	425	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	C	433	440	parallel
Strand 6	B	433	440	parallel
Strand 7	D	434	440	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	228	first strand
Strand 2	B	239	245	anti-parallel
Strand 3	B	276	282	anti-parallel
Strand 4	B	269	270	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	292	296	anti-parallel
Strand 3	B	307	310	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	326	first strand
Strand 2	B	336	346	anti-parallel
Strand 3	B	385	394	anti-parallel
Strand 4	B	372	375	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	405	410	anti-parallel
Strand 3	B	421	425	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	228	first strand
Strand 2	C	239	245	anti-parallel
Strand 3	C	277	282	anti-parallel
Strand 4	C	269	270	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	260	first strand
Strand 2	C	292	296	anti-parallel
Strand 3	C	308	309	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	326	first strand
Strand 2	C	336	344	anti-parallel
Strand 3	C	384	394	anti-parallel
Strand 4	C	372	375	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	326	first strand
Strand 2	C	336	344	anti-parallel
Strand 3	C	384	394	anti-parallel
Strand 4	C	379	381	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	356	first strand
Strand 2	C	404	410	anti-parallel
Strand 3	C	420	426	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	228	first strand
Strand 2	D	239	245	anti-parallel
Strand 3	D	276	282	anti-parallel
Strand 4	D	269	270	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	259	first strand
Strand 2	D	292	296	anti-parallel
Strand 3	D	308	310	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	325	first strand
Strand 2	D	336	346	anti-parallel
Strand 3	D	385	394	anti-parallel
Strand 4	D	372	375	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	331	first strand
Strand 2	D	336	346	anti-parallel
Strand 3	D	385	394	anti-parallel
Strand 4	D	379	380	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	356	first strand
Strand 2	D	404	411	anti-parallel
Strand 3	D	420	426	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	E	239	245	anti-parallel
Strand 3	E	276	282	anti-parallel
Strand 4	E	269	270	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	256	259	first strand
Strand 2	E	293	296	anti-parallel
Strand 3	E	308	309	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	324	325	first strand
Strand 2	E	336	346	anti-parallel
Strand 3	E	385	394	anti-parallel
Strand 4	E	372	375	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	324	325	first strand
Strand 2	E	336	346	anti-parallel
Strand 3	E	385	394	anti-parallel
Strand 4	E	379	380	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	351	356	first strand
Strand 2	E	405	411	anti-parallel
Strand 3	E	420	425	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	434	437	first strand
Strand 2	G	433	440	parallel
Strand 3	F	433	440	parallel
Strand 4	H	432	437	parallel
Strand 5	H	418	425	anti-parallel
Strand 6	H	404	411	anti-parallel
Strand 7	H	351	357	anti-parallel
Strand 8	H	360	361	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	228	first strand
Strand 2	F	239	245	anti-parallel
Strand 3	F	276	282	anti-parallel
Strand 4	F	269	270	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	260	first strand
Strand 2	F	292	296	anti-parallel
Strand 3	F	308	309	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	322	326	first strand
Strand 2	F	336	344	anti-parallel
Strand 3	F	386	394	anti-parallel
Strand 4	F	372	375	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	352	356	first strand
Strand 2	F	404	410	anti-parallel
Strand 3	F	420	426	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	228	first strand
Strand 2	G	239	245	anti-parallel
Strand 3	G	276	282	anti-parallel
Strand 4	G	269	270	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	256	259	first strand
Strand 2	G	292	296	anti-parallel
Strand 3	G	306	310	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	322	326	first strand
Strand 2	G	337	346	anti-parallel
Strand 3	G	385	393	anti-parallel
Strand 4	G	371	375	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	322	326	first strand
Strand 2	G	337	346	anti-parallel
Strand 3	G	385	393	anti-parallel
Strand 4	G	379	380	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	360	361	first strand
Strand 2	G	352	357	anti-parallel
Strand 3	G	404	410	anti-parallel
Strand 4	G	420	426	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	226	228	first strand
Strand 2	H	239	245	anti-parallel
Strand 3	H	277	282	anti-parallel
Strand 4	H	269	270	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	256	259	first strand
Strand 2	H	292	296	anti-parallel
Strand 3	H	308	310	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	323	325	first strand
Strand 2	H	336	343	anti-parallel
Strand 3	H	329	331	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	323	325	first strand
Strand 2	H	336	343	anti-parallel
Strand 3	H	387	394	anti-parallel
Strand 4	H	371	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHZ