Analysis of interatomic Contacts of Structural Units in PDB entry:
8GI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GI0 entry

There are 6 chains in PDB entry 8GI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 GLU 25LYS 82
A
 MET 1LEU 323
B
 MET 1LEU 323
C
 MET 1LEU 323
D
 MET 1LEU 323
E
 GLU 327THR 653
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 70 helices in PDB entry 8GI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
25 38Right-handed alpha
Helix 2
AA2
F
39 44Right-handed alpha
Helix 3
AA3
F
46 56Right-handed alpha
Helix 4
AA4
F
60 71Right-handed alpha
Helix 5
AA5
F
76 82Right-handed alpha
Helix 6
AA6
A
11 23Right-handed alpha
Helix 7
AA7
A
38 47Right-handed alpha
Helix 8
AA8
A
69 76Right-handed alpha
Helix 9
AA9
A
99 116Right-handed alpha
Helix 10
AB1
A
129 145Right-handed alpha
Helix 11
AB2
A
156 169Right-handed alpha
Helix 12
AB3
A
186 188Right-handed 310
Helix 13
AB4
A
194 197Right-handed 310
Helix 14
AB5
A
203 216Right-handed alpha
Helix 15
AB6
A
216 225Right-handed alpha
Helix 16
AB7
A
232 252Right-handed alpha
Helix 17
AB8
A
294 317Right-handed alpha
Helix 18
AB9
B
11 25Right-handed alpha
Helix 19
AC1
B
38 47Right-handed alpha
Helix 20
AC2
B
71 76Right-handed alpha
Helix 21
AC3
B
98 116Right-handed alpha
Helix 22
AC4
B
129 145Right-handed alpha
Helix 23
AC5
B
156 171Right-handed alpha
Helix 24
AC6
B
186 188Right-handed 310
Helix 25
AC7
B
194 197Right-handed 310
Helix 26
AC8
B
203 225Right-handed alpha
Helix 27
AC9
B
232 252Right-handed alpha
Helix 28
AD1
B
294 323Right-handed alpha
Helix 29
AD2
C
11 25Right-handed alpha
Helix 30
AD3
C
38 47Right-handed alpha
Helix 31
AD4
C
69 76Right-handed alpha
Helix 32
AD5
C
98 116Right-handed alpha
Helix 33
AD6
C
129 145Right-handed alpha
Helix 34
AD7
C
156 171Right-handed alpha
Helix 35
AD8
C
186 188Right-handed 310
Helix 36
AD9
C
194 197Right-handed 310
Helix 37
AE1
C
203 225Right-handed alpha
Helix 38
AE2
C
232 252Right-handed alpha
Helix 39
AE3
C
294 321Right-handed alpha
Helix 40
AE4
D
11 25Right-handed alpha
Helix 41
AE5
D
38 47Right-handed alpha
Helix 42
AE6
D
69 76Right-handed alpha
Helix 43
AE7
D
98 102Right-handed alpha
Helix 44
AE8
D
102 116Right-handed alpha
Helix 45
AE9
D
129 145Right-handed alpha
Helix 46
AF1
D
156 172Right-handed alpha
Helix 47
AF2
D
186 188Right-handed 310
Helix 48
AF3
D
194 197Right-handed 310
Helix 49
AF4
D
203 225Right-handed alpha
Helix 50
AF5
D
232 252Right-handed alpha
Helix 51
AF6
D
294 320Right-handed alpha
Helix 52
AF7
E
329 344Right-handed alpha
Helix 53
AF8
E
355 359Right-handed 310
Helix 54
AF9
E
361 373Right-handed alpha
Helix 55
AG1
E
374 377Right-handed 310
Helix 56
AG2
E
378 389Right-handed alpha
Helix 57
AG3
E
392 406Right-handed alpha
Helix 58
AG4
E
409 423Right-handed alpha
Helix 59
AG5
E
426 439Right-handed alpha
Helix 60
AG6
E
442 456Right-handed alpha
Helix 61
AG7
E
493 501Right-handed alpha
Helix 62
AG8
E
510 524Right-handed alpha
Helix 63
AG9
E
526 541Right-handed alpha
Helix 64
AH1
E
544 558Right-handed alpha
Helix 65
AH2
E
560 575Right-handed alpha
Helix 66
AH3
E
578 592Right-handed alpha
Helix 67
AH4
E
594 609Right-handed alpha
Helix 68
AH5
E
620 625Right-handed alpha
Helix 69
AH6
E
627 636Right-handed alpha
Helix 70
AH7
E
643 648Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 8GI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 60first strand
Strand 2
A
29 35parallel
Strand 3
A
3 7parallel
Strand 4
A
81 84parallel
Strand 5
A
122 125parallel
Strand 6
A
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 263first strand
Strand 2
A
272 280anti-parallel
Strand 3
A
283 287anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 60first strand
Strand 2
B
29 35parallel
Strand 3
B
3 7parallel
Strand 4
B
81 84parallel
Strand 5
B
122 125parallel
Strand 6
B
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 263first strand
Strand 2
B
272 280anti-parallel
Strand 3
B
283 287anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 60first strand
Strand 2
C
30 35parallel
Strand 3
C
3 7parallel
Strand 4
C
81 84parallel
Strand 5
C
122 125parallel
Strand 6
C
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 183first strand
Strand 2
C
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 263first strand
Strand 2
C
272 279anti-parallel
Strand 3
C
284 287anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 60first strand
Strand 2
D
30 35parallel
Strand 3
D
3 7parallel
Strand 4
D
81 84parallel
Strand 5
D
122 125parallel
Strand 6
D
152 154parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
181 183first strand
Strand 2
D
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
257 263first strand
Strand 2
D
272 280anti-parallel
Strand 3
D
283 287anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il