Analysis of interatomic Contacts of Structural Units in PDB entry:
8GI4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GI4 entry

There are 8 chains in PDB entry 8GI4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 145	PRO 239
B	GLN 145	HIS 237
C	GLN 145	PRO 239
D	GLN 145	HIS 237
E	GLN 145	ASP 238
F	GLN 145	HIS 237
G	GLN 145	ASP 238
H	GLN 145	HIS 237

There are 30 helices in PDB entry 8GI4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	187	190	Right-handed 310
Helix 2	AA2	A	191	195	Right-handed 310
Helix 3	AA3	A	213	215	Right-handed 310
Helix 4	AA4	A	216	226	Right-handed alpha
Helix 5	AA5	B	187	190	Right-handed 310
Helix 6	AA6	B	213	215	Right-handed 310
Helix 7	AA7	B	216	226	Right-handed alpha
Helix 8	AA8	C	187	190	Right-handed 310
Helix 9	AA9	C	191	195	Right-handed 310
Helix 10	AB1	C	213	215	Right-handed 310
Helix 11	AB2	C	216	226	Right-handed alpha
Helix 12	AB3	D	187	190	Right-handed 310
Helix 13	AB4	D	191	195	Right-handed 310
Helix 14	AB5	D	213	215	Right-handed 310
Helix 15	AB6	D	216	226	Right-handed alpha
Helix 16	AB7	E	187	190	Right-handed 310
Helix 17	AB8	E	191	195	Right-handed 310
Helix 18	AB9	E	213	215	Right-handed 310
Helix 19	AC1	E	216	226	Right-handed alpha
Helix 20	AC2	F	187	190	Right-handed 310
Helix 21	AC3	F	191	195	Right-handed 310
Helix 22	AC4	F	213	215	Right-handed 310
Helix 23	AC5	F	216	226	Right-handed alpha
Helix 24	AC6	G	187	190	Right-handed 310
Helix 25	AC7	G	213	215	Right-handed 310
Helix 26	AC8	G	216	226	Right-handed alpha
Helix 27	AC9	H	187	190	Right-handed 310
Helix 28	AD1	H	191	195	Right-handed 310
Helix 29	AD2	H	213	215	Right-handed 310
Helix 30	AD3	H	216	226	Right-handed alpha

There are 16 sheets in PDB entry 8GI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	155	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	203	207	anti-parallel
Strand 4	A	179	185	anti-parallel
Strand 5	A	165	170	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	155	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	203	207	anti-parallel
Strand 4	A	210	211	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	155	first strand
Strand 2	B	231	236	anti-parallel
Strand 3	B	203	207	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	170	first strand
Strand 2	B	179	185	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	155	first strand
Strand 2	C	231	237	anti-parallel
Strand 3	C	203	207	anti-parallel
Strand 4	C	179	185	anti-parallel
Strand 5	C	165	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	155	first strand
Strand 2	C	231	237	anti-parallel
Strand 3	C	203	207	anti-parallel
Strand 4	C	210	211	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	155	first strand
Strand 2	D	231	237	anti-parallel
Strand 3	D	203	207	anti-parallel
Strand 4	D	179	185	anti-parallel
Strand 5	D	165	170	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	155	first strand
Strand 2	D	231	237	anti-parallel
Strand 3	D	203	207	anti-parallel
Strand 4	D	210	211	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	155	first strand
Strand 2	E	231	237	anti-parallel
Strand 3	E	203	207	anti-parallel
Strand 4	E	179	185	anti-parallel
Strand 5	E	165	170	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	155	first strand
Strand 2	E	231	237	anti-parallel
Strand 3	E	203	207	anti-parallel
Strand 4	E	210	211	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	155	first strand
Strand 2	F	231	237	anti-parallel
Strand 3	F	203	207	anti-parallel
Strand 4	F	210	211	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	170	first strand
Strand 2	F	179	185	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	155	first strand
Strand 2	G	231	237	anti-parallel
Strand 3	G	203	207	anti-parallel
Strand 4	G	179	185	anti-parallel
Strand 5	G	165	170	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	155	first strand
Strand 2	G	231	237	anti-parallel
Strand 3	G	203	207	anti-parallel
Strand 4	G	210	211	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	155	first strand
Strand 2	H	231	237	anti-parallel
Strand 3	H	203	207	anti-parallel
Strand 4	H	210	211	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	170	first strand
Strand 2	H	179	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GI4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GI4