Analysis of interatomic Contacts of Structural Units in PDB entry:
8GID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GID entry

There is 1 chain in PDB entry 8GID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LEU 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8GID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 85Right-handed alpha
Helix 2
AA2
A
88 93Right-handed alpha
Helix 3
AA3
A
145 149Right-handed 310
Helix 4
AA4
A
165 172Right-handed alpha
Helix 5
AA5
A
182 192Right-handed alpha
Helix 6
AA6
A
251 255Right-handed 310
Helix 7
AA7
A
267 272Right-handed alpha
Helix 8
AA8
A
303 315Right-handed alpha
Helix 9
AA9
A
321 328Right-handed alpha
Helix 10
AB1
A
330 335Right-handed alpha
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There are 6 sheets in PDB entry 8GID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
276 285parallel
Strand 3
A
290 292anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
276 285parallel
Strand 3
A
33 44anti-parallel
Strand 4
A
14 18anti-parallel
Strand 5
A
23 27anti-parallel
Strand 6
A
297 300anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
110 114anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
257 260anti-parallel
Strand 3
A
208 211anti-parallel
Strand 4
A
216 219anti-parallel
Strand 5
A
163 164anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
246 249anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
353 356anti-parallel
Strand 3
A
343 345anti-parallel
Strand 4
A
195 196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il