Analysis of interatomic Contacts of Structural Units in PDB entry:
8GIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GIP entry

There are 6 chains in PDB entry 8GIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 148LYS 506
C
 ASP 148LYS 506
E
 A 1 T 18
F
 A 1 T 18
I
 A 1 T 18
J
 A 1 T 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8GIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
148 158Right-handed alpha
Helix 2
AA2
A
160 184Right-handed alpha
Helix 3
AA3
A
198 203Right-handed alpha
Helix 4
AA4
A
248 252Right-handed 310
Helix 5
AA5
A
258 276Right-handed alpha
Helix 6
AA6
A
319 323Right-handed 310
Helix 7
AA7
A
333 343Right-handed alpha
Helix 8
AA8
A
358 360Right-handed 310
Helix 9
AA9
A
367 376Right-handed alpha
Helix 10
AB1
A
393 412Right-handed alpha
Helix 11
AB2
A
413 418Right-handed 310
Helix 12
AB3
A
419 434Right-handed alpha
Helix 13
AB4
A
436 443Right-handed 310
Helix 14
AB5
A
444 463Right-handed alpha
Helix 15
AB6
A
482 499Right-handed alpha
Helix 16
AB7
A
500 506Right-handed 310
Helix 17
AB8
C
149 158Right-handed alpha
Helix 18
AB9
C
160 185Right-handed alpha
Helix 19
AC1
C
198 202Right-handed alpha
Helix 20
AC2
C
247 251Right-handed 310
Helix 21
AC3
C
258 276Right-handed alpha
Helix 22
AC4
C
319 323Right-handed 310
Helix 23
AC5
C
333 343Right-handed alpha
Helix 24
AC6
C
358 360Right-handed 310
Helix 25
AC7
C
367 377Right-handed alpha
Helix 26
AC8
C
393 412Right-handed alpha
Helix 27
AC9
C
413 416Right-handed 310
Helix 28
AD1
C
419 434Right-handed alpha
Helix 29
AD2
C
436 443Right-handed 310
Helix 30
AD3
C
444 463Right-handed alpha
Helix 31
AD4
C
482 499Right-handed alpha
Helix 32
AD5
C
500 505Right-handed 310
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There are 4 sheets in PDB entry 8GIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
303 314parallel
Strand 4
A
345 349anti-parallel
Strand 5
A
362 366anti-parallel
Strand 6
A
234 238anti-parallel
Strand 7
A
224 227anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
303 314parallel
Strand 4
A
293 299anti-parallel
Strand 5
A
281 284anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 197first strand
Strand 2
C
211 219anti-parallel
Strand 3
C
303 314parallel
Strand 4
C
345 349anti-parallel
Strand 5
C
362 366anti-parallel
Strand 6
C
234 238anti-parallel
Strand 7
C
224 227anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 197first strand
Strand 2
C
211 219anti-parallel
Strand 3
C
303 314parallel
Strand 4
C
293 299anti-parallel
Strand 5
C
282 284anti-parallel
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