Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GJ2 entry

There are 10 chains in PDB entry 8GJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 343
B	SER 2	LEU 365
C	TYR 3	GLU 369
D	SER 2	PRO 361
E	MET 1	LEU 334
F	THR 2	ILE 33
H	MET 1	LEU 366
I	MET 1	LEU 366
X	G 1	G 23
Y	T 40	C 68

There are128 helices in PDB entry 8GJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	16	Right-handed alpha
Helix 2	AA2	A	27	46	Right-handed alpha
Helix 3	AA3	A	60	70	Right-handed alpha
Helix 4	AA4	A	90	103	Right-handed alpha
Helix 5	AA5	A	118	123	Right-handed alpha
Helix 6	AA6	A	124	130	Right-handed alpha
Helix 7	AA7	A	146	158	Right-handed alpha
Helix 8	AA8	A	163	174	Right-handed alpha
Helix 9	AA9	A	177	192	Right-handed alpha
Helix 10	AB1	A	198	205	Right-handed alpha
Helix 11	AB2	A	213	224	Right-handed alpha
Helix 12	AB3	A	225	240	Right-handed alpha
Helix 13	AB4	A	242	264	Right-handed alpha
Helix 14	AB5	A	268	277	Right-handed alpha
Helix 15	AB6	A	282	291	Right-handed alpha
Helix 16	AB7	A	299	314	Right-handed alpha
Helix 17	AB8	A	319	332	Right-handed alpha
Helix 18	AB9	B	5	10	Right-handed alpha
Helix 19	AC1	B	14	18	Right-handed 310
Helix 20	AC2	B	21	35	Right-handed alpha
Helix 21	AC3	B	50	63	Right-handed alpha
Helix 22	AC4	B	76	85	Right-handed alpha
Helix 23	AC5	B	100	109	Right-handed alpha
Helix 24	AC6	B	110	113	Right-handed 310
Helix 25	AC7	B	128	131	Right-handed 310
Helix 26	AC8	B	132	145	Right-handed alpha
Helix 27	AC9	B	158	162	Right-handed 310
Helix 28	AD1	B	163	168	Right-handed alpha
Helix 29	AD2	B	179	195	Right-handed alpha
Helix 30	AD3	B	199	211	Right-handed alpha
Helix 31	AD4	B	213	229	Right-handed alpha
Helix 32	AD5	B	233	245	Right-handed alpha
Helix 33	AD6	B	247	258	Right-handed alpha
Helix 34	AD7	B	260	274	Right-handed alpha
Helix 35	AD8	B	277	298	Right-handed alpha
Helix 36	AD9	B	299	302	Right-handed 310
Helix 37	AE1	B	303	307	Right-handed 310
Helix 38	AE2	B	309	320	Right-handed alpha
Helix 39	AE3	B	321	339	Right-handed alpha
Helix 40	AE4	B	340	342	Right-handed 310
Helix 41	AE5	B	344	358	Right-handed alpha
Helix 42	AE6	C	5	10	Right-handed alpha
Helix 43	AE7	C	14	18	Right-handed 310
Helix 44	AE8	C	21	35	Right-handed alpha
Helix 45	AE9	C	50	64	Right-handed alpha
Helix 46	AF1	C	76	85	Right-handed alpha
Helix 47	AF2	C	100	109	Right-handed alpha
Helix 48	AF3	C	128	131	Right-handed 310
Helix 49	AF4	C	132	139	Right-handed alpha
Helix 50	AF5	C	139	145	Right-handed alpha
Helix 51	AF6	C	158	162	Right-handed 310
Helix 52	AF7	C	163	168	Right-handed alpha
Helix 53	AF8	C	179	195	Right-handed alpha
Helix 54	AF9	C	199	210	Right-handed alpha
Helix 55	AG1	C	213	229	Right-handed alpha
Helix 56	AG2	C	233	242	Right-handed alpha
Helix 57	AG3	C	245	259	Right-handed alpha
Helix 58	AG4	C	260	275	Right-handed alpha
Helix 59	AG5	C	277	298	Right-handed alpha
Helix 60	AG6	C	299	302	Right-handed 310
Helix 61	AG7	C	306	320	Right-handed alpha
Helix 62	AG8	C	321	338	Right-handed alpha
Helix 63	AG9	C	339	342	Right-handed 310
Helix 64	AH1	C	344	359	Right-handed alpha
Helix 65	AH2	D	5	10	Right-handed alpha
Helix 66	AH3	D	14	18	Right-handed 310
Helix 67	AH4	D	21	35	Right-handed alpha
Helix 68	AH5	D	50	63	Right-handed alpha
Helix 69	AH6	D	76	85	Right-handed alpha
Helix 70	AH7	D	100	110	Right-handed alpha
Helix 71	AH8	D	128	131	Right-handed 310
Helix 72	AH9	D	132	145	Right-handed alpha
Helix 73	AI1	D	158	162	Right-handed 310
Helix 74	AI2	D	163	169	Right-handed alpha
Helix 75	AI3	D	179	195	Right-handed alpha
Helix 76	AI4	D	199	211	Right-handed alpha
Helix 77	AI5	D	213	228	Right-handed alpha
Helix 78	AI6	D	233	242	Right-handed alpha
Helix 79	AI7	D	247	259	Right-handed alpha
Helix 80	AI8	D	260	275	Right-handed alpha
Helix 81	AI9	D	277	298	Right-handed alpha
Helix 82	AJ1	D	299	302	Right-handed 310
Helix 83	AJ2	D	309	320	Right-handed alpha
Helix 84	AJ3	D	321	339	Right-handed alpha
Helix 85	AJ4	D	340	342	Right-handed 310
Helix 86	AJ5	D	344	358	Right-handed alpha
Helix 87	AJ6	E	4	6	Right-handed 310
Helix 88	AJ7	E	7	21	Right-handed alpha
Helix 89	AJ8	E	36	49	Right-handed alpha
Helix 90	AJ9	E	62	71	Right-handed alpha
Helix 91	AK1	E	89	101	Right-handed alpha
Helix 92	AK2	E	116	120	Right-handed 310
Helix 93	AK3	E	121	134	Right-handed alpha
Helix 94	AK4	E	147	151	Right-handed 310
Helix 95	AK5	E	152	158	Right-handed alpha
Helix 96	AK6	E	168	180	Right-handed alpha
Helix 97	AK7	E	183	194	Right-handed alpha
Helix 98	AK8	E	199	207	Right-handed alpha
Helix 99	AK9	E	208	227	Right-handed alpha
Helix 100	AL1	E	228	231	Right-handed 310
Helix 101	AL2	E	232	237	Right-handed alpha
Helix 102	AL3	E	240	261	Right-handed alpha
Helix 103	AL4	E	270	281	Right-handed alpha
Helix 104	AL5	E	282	303	Right-handed alpha
Helix 105	AL6	E	307	324	Right-handed alpha
Helix 106	AL7	F	3	13	Right-handed alpha
Helix 107	AL8	F	21	25	Right-handed 310
Helix 108	AL9	H	7	19	Right-handed alpha
Helix 109	AM1	H	28	30	Right-handed 310
Helix 110	AM2	H	72	82	Right-handed alpha
Helix 111	AM3	H	112	116	Right-handed 310
Helix 112	AM4	H	131	143	Right-handed alpha
Helix 113	AM5	H	152	157	Right-handed 310
Helix 114	AM6	H	196	207	Right-handed alpha
Helix 115	AM7	H	244	248	Right-handed 310
Helix 116	AM8	H	260	273	Right-handed alpha
Helix 117	AM9	H	321	331	Right-handed alpha
Helix 118	AN1	I	7	19	Right-handed alpha
Helix 119	AN2	I	27	31	Right-handed alpha
Helix 120	AN3	I	72	82	Right-handed alpha
Helix 121	AN4	I	112	116	Right-handed 310
Helix 122	AN5	I	131	143	Right-handed alpha
Helix 123	AN6	I	144	146	Right-handed 310
Helix 124	AN7	I	152	155	Right-handed 310
Helix 125	AN8	I	197	207	Right-handed alpha
Helix 126	AN9	I	243	248	Right-handed alpha
Helix 127	AO1	I	260	272	Right-handed alpha
Helix 128	AO2	I	321	332	Right-handed alpha

There are 13 sheets in PDB entry 8GJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	134	139	parallel
Strand 3	A	20	25	parallel
Strand 4	A	108	114	parallel
Strand 5	A	78	83	parallel
Strand 6	A	49	54	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	196	197	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	94	first strand
Strand 2	B	121	126	parallel
Strand 3	B	150	155	parallel
Strand 4	B	40	44	parallel
Strand 5	B	171	174	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	F	17	19	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	94	first strand
Strand 2	C	121	126	parallel
Strand 3	C	150	156	parallel
Strand 4	C	40	44	parallel
Strand 5	C	171	174	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	94	first strand
Strand 2	D	121	126	parallel
Strand 3	D	150	155	parallel
Strand 4	D	40	45	parallel
Strand 5	D	171	175	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	110	114	parallel
Strand 3	E	139	145	parallel
Strand 4	E	26	30	parallel
Strand 5	E	160	163	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	87	93	anti-parallel
Strand 3	H	96	101	anti-parallel
Strand 4	H	104	109	anti-parallel
Strand 5	I	301	306	anti-parallel
Strand 6	I	289	295	anti-parallel
Strand 7	I	280	286	anti-parallel
Strand 8	I	315	320	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	32	38	anti-parallel
Strand 3	H	41	47	anti-parallel
Strand 4	H	51	58	anti-parallel
Strand 5	H	230	235	anti-parallel
Strand 6	H	222	227	anti-parallel
Strand 7	H	214	219	anti-parallel
Strand 8	H	124	130	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	254	259	first strand
Strand 2	H	335	340	anti-parallel
Strand 3	H	347	351	anti-parallel
Strand 4	H	357	361	anti-parallel
Strand 5	H	176	195	anti-parallel
Strand 6	H	158	172	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	315	320	first strand
Strand 2	H	280	286	anti-parallel
Strand 3	H	289	296	anti-parallel
Strand 4	H	300	306	anti-parallel
Strand 5	I	104	109	anti-parallel
Strand 6	I	96	98	anti-parallel
Strand 7	I	87	93	anti-parallel
Strand 8	I	2	6	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	71	first strand
Strand 2	I	32	38	anti-parallel
Strand 3	I	41	47	anti-parallel
Strand 4	I	51	58	anti-parallel
Strand 5	I	230	235	anti-parallel
Strand 6	I	222	227	anti-parallel
Strand 7	I	214	219	anti-parallel
Strand 8	I	124	130	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	254	259	first strand
Strand 2	I	335	340	anti-parallel
Strand 3	I	347	351	anti-parallel
Strand 4	I	357	361	anti-parallel
Strand 5	I	176	196	anti-parallel
Strand 6	I	157	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJ2