Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GJ3 entry

There are 8 chains in PDB entry 8GJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 343
B
 SER 2LEU 365
C
 TYR 3GLU 369
D
 SER 2PRO 361
E
 MET 1LEU 334
F
 THR 2ALA 30
X
 T 2 T 16
Y
 T 6 A 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 8GJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
27 46Right-handed alpha
Helix 3
AA3
A
60 71Right-handed alpha
Helix 4
AA4
A
90 103Right-handed alpha
Helix 5
AA5
A
118 123Right-handed alpha
Helix 6
AA6
A
124 130Right-handed alpha
Helix 7
AA7
A
146 158Right-handed alpha
Helix 8
AA8
A
163 174Right-handed alpha
Helix 9
AA9
A
177 192Right-handed alpha
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
213 224Right-handed alpha
Helix 12
AB3
A
225 240Right-handed alpha
Helix 13
AB4
A
242 264Right-handed alpha
Helix 14
AB5
A
268 276Right-handed alpha
Helix 15
AB6
A
282 293Right-handed alpha
Helix 16
AB7
A
294 314Right-handed alpha
Helix 17
AB8
A
319 332Right-handed alpha
Helix 18
AB9
B
5 10Right-handed alpha
Helix 19
AC1
B
21 35Right-handed alpha
Helix 20
AC2
B
50 63Right-handed alpha
Helix 21
AC3
B
76 85Right-handed alpha
Helix 22
AC4
B
100 110Right-handed alpha
Helix 23
AC5
B
128 131Right-handed 310
Helix 24
AC6
B
132 145Right-handed alpha
Helix 25
AC7
B
158 162Right-handed 310
Helix 26
AC8
B
163 168Right-handed alpha
Helix 27
AC9
B
180 194Right-handed alpha
Helix 28
AD1
B
199 211Right-handed alpha
Helix 29
AD2
B
213 228Right-handed alpha
Helix 30
AD3
B
233 244Right-handed alpha
Helix 31
AD4
B
247 259Right-handed alpha
Helix 32
AD5
B
260 275Right-handed alpha
Helix 33
AD6
B
277 298Right-handed alpha
Helix 34
AD7
B
299 302Right-handed 310
Helix 35
AD8
B
303 308Right-handed 310
Helix 36
AD9
B
309 320Right-handed alpha
Helix 37
AE1
B
321 339Right-handed alpha
Helix 38
AE2
B
340 342Right-handed 310
Helix 39
AE3
B
344 358Right-handed alpha
Helix 40
AE4
C
5 10Right-handed alpha
Helix 41
AE5
C
14 18Right-handed 310
Helix 42
AE6
C
21 35Right-handed alpha
Helix 43
AE7
C
50 63Right-handed alpha
Helix 44
AE8
C
76 85Right-handed alpha
Helix 45
AE9
C
100 109Right-handed alpha
Helix 46
AF1
C
128 131Right-handed 310
Helix 47
AF2
C
132 145Right-handed alpha
Helix 48
AF3
C
158 162Right-handed 310
Helix 49
AF4
C
163 169Right-handed alpha
Helix 50
AF5
C
179 195Right-handed alpha
Helix 51
AF6
C
199 211Right-handed alpha
Helix 52
AF7
C
213 228Right-handed alpha
Helix 53
AF8
C
233 242Right-handed alpha
Helix 54
AF9
C
245 258Right-handed alpha
Helix 55
AG1
C
260 275Right-handed alpha
Helix 56
AG2
C
277 298Right-handed alpha
Helix 57
AG3
C
299 302Right-handed 310
Helix 58
AG4
C
309 320Right-handed alpha
Helix 59
AG5
C
321 339Right-handed alpha
Helix 60
AG6
C
340 342Right-handed 310
Helix 61
AG7
C
344 359Right-handed alpha
Helix 62
AG8
D
5 10Right-handed alpha
Helix 63
AG9
D
14 18Right-handed 310
Helix 64
AH1
D
21 35Right-handed alpha
Helix 65
AH2
D
50 63Right-handed alpha
Helix 66
AH3
D
76 85Right-handed alpha
Helix 67
AH4
D
100 111Right-handed alpha
Helix 68
AH5
D
128 131Right-handed 310
Helix 69
AH6
D
132 145Right-handed alpha
Helix 70
AH7
D
158 162Right-handed 310
Helix 71
AH8
D
163 169Right-handed alpha
Helix 72
AH9
D
179 195Right-handed alpha
Helix 73
AI1
D
199 211Right-handed alpha
Helix 74
AI2
D
213 228Right-handed alpha
Helix 75
AI3
D
233 241Right-handed alpha
Helix 76
AI4
D
247 259Right-handed alpha
Helix 77
AI5
D
260 275Right-handed alpha
Helix 78
AI6
D
277 298Right-handed alpha
Helix 79
AI7
D
299 302Right-handed 310
Helix 80
AI8
D
309 320Right-handed alpha
Helix 81
AI9
D
321 339Right-handed alpha
Helix 82
AJ1
D
344 358Right-handed alpha
Helix 83
AJ2
E
4 6Right-handed 310
Helix 84
AJ3
E
7 20Right-handed alpha
Helix 85
AJ4
E
36 50Right-handed alpha
Helix 86
AJ5
E
62 71Right-handed alpha
Helix 87
AJ6
E
89 102Right-handed alpha
Helix 88
AJ7
E
116 120Right-handed 310
Helix 89
AJ8
E
121 134Right-handed alpha
Helix 90
AJ9
E
147 151Right-handed 310
Helix 91
AK1
E
152 157Right-handed alpha
Helix 92
AK2
E
168 180Right-handed alpha
Helix 93
AK3
E
183 194Right-handed alpha
Helix 94
AK4
E
199 207Right-handed alpha
Helix 95
AK5
E
208 227Right-handed alpha
Helix 96
AK6
E
228 231Right-handed 310
Helix 97
AK7
E
232 237Right-handed alpha
Helix 98
AK8
E
240 261Right-handed alpha
Helix 99
AK9
E
270 281Right-handed alpha
Helix 100
AL1
E
282 303Right-handed alpha
Helix 101
AL2
E
307 324Right-handed alpha
Helix 102
AL3
F
3 13Right-handed alpha
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There are 8 sheets in PDB entry 8GJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
134 139parallel
Strand 3
A
20 25parallel
Strand 4
A
108 114parallel
Strand 5
A
78 83parallel
Strand 6
A
49 52parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
196 197parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 94first strand
Strand 2
B
121 126parallel
Strand 3
B
150 155parallel
Strand 4
B
40 44parallel
Strand 5
B
171 174parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
F
17 18anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 94first strand
Strand 2
C
121 126parallel
Strand 3
C
150 156parallel
Strand 4
C
40 44parallel
Strand 5
C
171 174parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
197 198first strand
Strand 2
C
231 232parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 94first strand
Strand 2
D
121 126parallel
Strand 3
D
150 156parallel
Strand 4
D
40 44parallel
Strand 5
D
171 174parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 79first strand
Strand 2
E
110 114parallel
Strand 3
E
139 145parallel
Strand 4
E
26 30parallel
Strand 5
E
160 163parallel
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