Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GJ8 entry

There is 1 chain in PDB entry 8GJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 74CYS 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8GJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 89Right-handed alpha
Helix 2
AA2
A
96 104Right-handed alpha
Helix 3
AA3
A
122 134Right-handed alpha
Helix 4
AA4
A
135 136Right-handed 310
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
157 178Right-handed alpha
Helix 7
AA7
A
183 191Right-handed alpha
Helix 8
AA8
A
192 199Right-handed alpha
Helix 9
AA9
A
207 225Right-handed alpha
Helix 10
AB1
A
237 241Right-handed 310
Helix 11
AB2
A
246 268Right-handed alpha
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There are 2 sheets in PDB entry 8GJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
107 108anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
146 151parallel
Strand 3
A
228 234parallel
Strand 4
A
271 276parallel
Strand 5
A
112 116parallel
Strand 6
A
306 313parallel
Strand 7
A
316 323anti-parallel
Strand 8
A
331 337anti-parallel
Strand 9
A
340 342anti-parallel
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