Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GJA entry

There are 5 chains in PDB entry 8GJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 84	GLY 357
B	ASP 5	LYS 345
C	LYS 84	GLY 357
D	MET 1	LYS 345
E	ASP 85	GLY 154

There are 88 helices in PDB entry 8GJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	96	104	Right-handed alpha
Helix 2	AA2	A	122	134	Right-handed alpha
Helix 3	AA3	A	135	136	Right-handed 310
Helix 4	AA4	A	137	141	Right-handed 310
Helix 5	AA5	A	157	180	Right-handed alpha
Helix 6	AA6	A	181	191	Right-handed alpha
Helix 7	AA7	A	192	199	Right-handed alpha
Helix 8	AA8	A	207	217	Right-handed alpha
Helix 9	AA9	A	217	225	Right-handed alpha
Helix 10	AB1	A	237	241	Right-handed 310
Helix 11	AB2	A	246	268	Right-handed alpha
Helix 12	AB3	B	10	15	Right-handed alpha
Helix 13	AB4	B	21	26	Right-handed alpha
Helix 14	AB5	B	29	37	Right-handed alpha
Helix 15	AB6	B	40	55	Right-handed alpha
Helix 16	AB7	B	63	68	Right-handed alpha
Helix 17	AB8	B	72	76	Right-handed 310
Helix 18	AB9	B	84	91	Right-handed alpha
Helix 19	AC1	B	110	122	Right-handed alpha
Helix 20	AC2	B	123	124	Right-handed 310
Helix 21	AC3	B	125	129	Right-handed 310
Helix 22	AC4	B	145	160	Right-handed alpha
Helix 23	AC5	B	162	167	Right-handed alpha
Helix 24	AC6	B	170	172	Right-handed 310
Helix 25	AC7	B	181	191	Right-handed alpha
Helix 26	AC8	B	191	200	Right-handed alpha
Helix 27	AC9	B	219	245	Right-handed alpha
Helix 28	AD1	B	274	280	Right-handed alpha
Helix 29	AD2	C	96	104	Right-handed alpha
Helix 30	AD3	C	122	134	Right-handed alpha
Helix 31	AD4	C	135	136	Right-handed 310
Helix 32	AD5	C	137	141	Right-handed 310
Helix 33	AD6	C	157	180	Right-handed alpha
Helix 34	AD7	C	181	191	Right-handed alpha
Helix 35	AD8	C	192	199	Right-handed alpha
Helix 36	AD9	C	207	217	Right-handed alpha
Helix 37	AE1	C	217	225	Right-handed alpha
Helix 38	AE2	C	237	241	Right-handed 310
Helix 39	AE3	C	246	268	Right-handed alpha
Helix 40	AE4	D	7	17	Right-handed alpha
Helix 41	AE5	D	21	28	Right-handed alpha
Helix 42	AE6	D	29	38	Right-handed alpha
Helix 43	AE7	D	40	55	Right-handed alpha
Helix 44	AE8	D	63	68	Right-handed alpha
Helix 45	AE9	D	72	76	Right-handed 310
Helix 46	AF1	D	84	91	Right-handed alpha
Helix 47	AF2	D	110	122	Right-handed alpha
Helix 48	AF3	D	123	124	Right-handed 310
Helix 49	AF4	D	125	129	Right-handed 310
Helix 50	AF5	D	145	160	Right-handed alpha
Helix 51	AF6	D	162	167	Right-handed alpha
Helix 52	AF7	D	169	172	Right-handed 310
Helix 53	AF8	D	181	191	Right-handed alpha
Helix 54	AF9	D	191	200	Right-handed alpha
Helix 55	AG1	D	209	215	Right-handed alpha
Helix 56	AG2	D	224	245	Right-handed alpha
Helix 57	AG3	D	275	280	Right-handed alpha
Helix 58	AG4	E	85	89	Right-handed 310
Helix 59	AG5	E	96	104	Right-handed alpha
Helix 60	AG6	E	122	134	Right-handed alpha
Helix 61	AG7	E	135	136	Right-handed 310
Helix 62	AG8	E	137	141	Right-handed 310
Helix 63	AG9	E	157	180	Right-handed alpha
Helix 64	AH1	E	181	191	Right-handed alpha
Helix 65	AH2	E	192	199	Right-handed alpha
Helix 66	AH3	E	207	217	Right-handed alpha
Helix 67	AH4	E	217	225	Right-handed alpha
Helix 68	AH5	E	237	245	Right-handed 310
Helix 69	AH6	E	246	268	Right-handed alpha
Helix 70	AH7	F	9	17	Right-handed alpha
Helix 71	AH8	F	21	28	Right-handed alpha
Helix 72	AH9	F	29	37	Right-handed alpha
Helix 73	AI1	F	40	55	Right-handed alpha
Helix 74	AI2	F	63	68	Right-handed alpha
Helix 75	AI3	F	72	76	Right-handed 310
Helix 76	AI4	F	84	91	Right-handed alpha
Helix 77	AI5	F	110	122	Right-handed alpha
Helix 78	AI6	F	123	124	Right-handed 310
Helix 79	AI7	F	125	129	Right-handed 310
Helix 80	AI8	F	145	160	Right-handed alpha
Helix 81	AI9	F	162	167	Right-handed alpha
Helix 82	AJ1	F	169	172	Right-handed 310
Helix 83	AJ2	F	181	191	Right-handed alpha
Helix 84	AJ3	F	191	200	Right-handed alpha
Helix 85	AJ4	F	209	216	Right-handed alpha
Helix 86	AJ5	F	222	245	Right-handed alpha
Helix 87	AJ6	F	254	258	Right-handed alpha
Helix 88	AJ7	F	275	280	Right-handed alpha

There are 17 sheets in PDB entry 8GJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	107	108	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	343	first strand
Strand 2	A	331	337	anti-parallel
Strand 3	A	316	323	anti-parallel
Strand 4	A	306	313	anti-parallel
Strand 5	A	112	117	parallel
Strand 6	A	271	276	parallel
Strand 7	A	228	234	parallel
Strand 8	A	146	151	parallel
Strand 9	A	200	204	parallel
Strand 10	B	61	62	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	279	first strand
Strand 2	A	293	294	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	95	96	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	178	first strand
Strand 2	B	134	139	parallel
Strand 3	B	202	208	parallel
Strand 4	B	248	255	parallel
Strand 5	B	271	272	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	178	first strand
Strand 2	B	134	139	parallel
Strand 3	B	202	208	parallel
Strand 4	B	248	255	parallel
Strand 5	B	100	105	parallel
Strand 6	B	284	299	parallel
Strand 7	B	308	321	anti-parallel
Strand 8	B	329	334	anti-parallel
Strand 9	B	339	341	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	107	108	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	331	337	anti-parallel
Strand 3	C	316	323	anti-parallel
Strand 4	C	306	313	anti-parallel
Strand 5	C	112	117	parallel
Strand 6	C	271	276	parallel
Strand 7	C	228	234	parallel
Strand 8	C	146	151	parallel
Strand 9	C	200	204	parallel
Strand 10	D	61	62	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	281	first strand
Strand 2	C	291	294	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	80	first strand
Strand 2	D	95	96	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	178	first strand
Strand 2	D	134	139	parallel
Strand 3	D	202	208	parallel
Strand 4	D	248	256	parallel
Strand 5	D	270	272	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	178	first strand
Strand 2	D	134	139	parallel
Strand 3	D	202	208	parallel
Strand 4	D	248	256	parallel
Strand 5	D	100	105	parallel
Strand 6	D	284	300	parallel
Strand 7	D	306	321	anti-parallel
Strand 8	D	329	334	anti-parallel
Strand 9	D	339	341	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	107	108	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	342	first strand
Strand 2	E	331	337	anti-parallel
Strand 3	E	316	323	anti-parallel
Strand 4	E	306	313	anti-parallel
Strand 5	E	112	117	parallel
Strand 6	E	271	276	parallel
Strand 7	E	228	234	parallel
Strand 8	E	146	151	parallel
Strand 9	E	200	204	parallel
Strand 10	F	61	62	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	281	first strand
Strand 2	E	291	294	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	80	first strand
Strand 2	F	95	96	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	178	first strand
Strand 2	F	134	139	parallel
Strand 3	F	202	208	parallel
Strand 4	F	248	253	parallel
Strand 5	F	100	105	parallel
Strand 6	F	284	298	parallel
Strand 7	F	309	321	anti-parallel
Strand 8	F	329	334	anti-parallel
Strand 9	F	339	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJA