Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GJB entry

There are 2 chains in PDB entry 8GJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 13LEU 332
B
 ALA 11SER 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8GJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 38Right-handed alpha
Helix 2
AA2
A
69 81Right-handed alpha
Helix 3
AA3
A
92 99Right-handed alpha
Helix 4
AA4
A
99 121Right-handed alpha
Helix 5
AA5
A
132 134Right-handed 310
Helix 6
AA6
A
153 173Right-handed alpha
Helix 7
AA7
A
198 210Right-handed alpha
Helix 8
AA8
A
228 241Right-handed alpha
Helix 9
AA9
A
242 246Right-handed 310
Helix 10
AB1
A
259 272Right-handed alpha
Helix 11
AB2
A
282 290Right-handed alpha
Helix 12
AB3
A
297 305Right-handed alpha
Helix 13
AB4
A
311 328Right-handed alpha
Helix 14
AB5
B
23 38Right-handed alpha
Helix 15
AB6
B
69 81Right-handed alpha
Helix 16
AB7
B
92 99Right-handed alpha
Helix 17
AB8
B
99 121Right-handed alpha
Helix 18
AB9
B
132 134Right-handed 310
Helix 19
AC1
B
153 173Right-handed alpha
Helix 20
AC2
B
198 210Right-handed alpha
Helix 21
AC3
B
228 241Right-handed alpha
Helix 22
AC4
B
242 246Right-handed 310
Helix 23
AC5
B
259 272Right-handed alpha
Helix 24
AC6
B
282 290Right-handed alpha
Helix 25
AC7
B
297 305Right-handed alpha
Helix 26
AC8
B
311 328Right-handed alpha
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There are 8 sheets in PDB entry 8GJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
42 46parallel
Strand 3
A
16 19parallel
Strand 4
A
84 87parallel
Strand 5
A
124 126parallel
Strand 6
A
176 182parallel
Strand 7
A
129 130parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
42 46parallel
Strand 3
A
16 19parallel
Strand 4
A
84 87parallel
Strand 5
A
124 126parallel
Strand 6
A
176 182parallel
Strand 7
A
250 252parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
223 227parallel
Strand 3
A
256 258anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
277 279parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
42 46parallel
Strand 3
B
16 19parallel
Strand 4
B
84 87parallel
Strand 5
B
124 126parallel
Strand 6
B
177 182parallel
Strand 7
B
129 130parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
42 46parallel
Strand 3
B
16 19parallel
Strand 4
B
84 87parallel
Strand 5
B
124 126parallel
Strand 6
B
177 182parallel
Strand 7
B
250 252parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
223 227parallel
Strand 3
B
256 258anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 215first strand
Strand 2
B
277 279parallel
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