Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GJF entry

There are 6 chains in PDB entry 8GJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 256
B	MET 1	ILE 254
C	MET 1	GLY 255
D	ARG 142	LYS 154
E	ARG 143	LYS 154
F	ARG 142	ARG 155

There are 23 helices in PDB entry 8GJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	18	Right-handed alpha
Helix 2	AA2	A	55	57	Right-handed 310
Helix 3	AA3	A	72	80	Right-handed alpha
Helix 4	AA4	A	141	153	Right-handed alpha
Helix 5	AA5	A	209	216	Right-handed alpha
Helix 6	AA6	A	217	222	Right-handed 310
Helix 7	AA7	B	9	21	Right-handed alpha
Helix 8	AA8	B	55	57	Right-handed 310
Helix 9	AA9	B	72	80	Right-handed alpha
Helix 10	AB1	B	141	153	Right-handed alpha
Helix 11	AB2	B	190	194	Right-handed 310
Helix 12	AB3	B	209	216	Right-handed alpha
Helix 13	AB4	B	217	222	Right-handed 310
Helix 14	AB5	C	9	20	Right-handed alpha
Helix 15	AB6	C	55	57	Right-handed 310
Helix 16	AB7	C	72	80	Right-handed alpha
Helix 17	AB8	C	141	153	Right-handed alpha
Helix 18	AB9	C	190	194	Right-handed 310
Helix 19	AC1	C	209	216	Right-handed alpha
Helix 20	AC2	C	217	222	Right-handed 310
Helix 21	AC3	D	146	150	Right-handed 310
Helix 22	AC4	E	146	150	Right-handed 310
Helix 23	AC5	F	146	150	Right-handed 310

There are 8 sheets in PDB entry 8GJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	98	104	anti-parallel
Strand 5	A	111	117	anti-parallel
Strand 6	B	176	183	anti-parallel
Strand 7	B	166	172	anti-parallel
Strand 8	B	157	162	anti-parallel
Strand 9	B	203	208	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	25	31	anti-parallel
Strand 3	A	34	40	anti-parallel
Strand 4	A	46	53	anti-parallel
Strand 5	A	244	250	anti-parallel
Strand 6	A	233	240	anti-parallel
Strand 7	A	224	230	anti-parallel
Strand 8	A	135	140	anti-parallel
Strand 9	A	196	199	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	208	first strand
Strand 2	A	157	162	anti-parallel
Strand 3	A	166	172	anti-parallel
Strand 4	A	176	183	anti-parallel
Strand 5	C	111	117	anti-parallel
Strand 6	C	98	104	anti-parallel
Strand 7	C	87	92	anti-parallel
Strand 8	C	2	6	anti-parallel
Strand 9	C	60	61	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	254	first strand
Strand 2	D	143	144	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	111	117	anti-parallel
Strand 6	C	176	183	anti-parallel
Strand 7	C	166	173	anti-parallel
Strand 8	C	157	162	anti-parallel
Strand 9	C	203	208	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	25	31	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	46	53	anti-parallel
Strand 5	B	244	250	anti-parallel
Strand 6	B	235	240	anti-parallel
Strand 7	B	224	229	anti-parallel
Strand 8	B	135	140	anti-parallel
Strand 9	B	196	199	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	25	31	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	46	53	anti-parallel
Strand 5	C	244	250	anti-parallel
Strand 6	C	235	240	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	196	199	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	F	153	154	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJF