Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GJK entry

There are 3 chains in PDB entry 8GJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	LYS 1032
A	MET 1	LYS 1032
C	MET 1	LYS 1032

There are112 helices in PDB entry 8GJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	9	Right-handed alpha
Helix 2	AA2	B	9	31	Right-handed alpha
Helix 3	AA3	B	54	62	Right-handed alpha
Helix 4	AA4	B	62	70	Right-handed alpha
Helix 5	AA5	B	99	118	Right-handed alpha
Helix 6	AA6	B	119	126	Right-handed alpha
Helix 7	AA7	B	150	161	Right-handed alpha
Helix 8	AA8	B	162	169	Right-handed alpha
Helix 9	AA9	B	190	197	Right-handed alpha
Helix 10	AB1	B	200	212	Right-handed alpha
Helix 11	AB2	B	243	249	Right-handed alpha
Helix 12	AB3	B	263	266	Right-handed alpha
Helix 13	AB4	B	299	317	Right-handed alpha
Helix 14	AB5	B	330	360	Right-handed alpha
Helix 15	AB6	B	362	388	Right-handed alpha
Helix 16	AB7	B	392	402	Right-handed alpha
Helix 17	AB8	B	402	424	Right-handed alpha
Helix 18	AB9	B	428	459	Right-handed alpha
Helix 19	AC1	B	463	489	Right-handed alpha
Helix 20	AC2	B	489	499	Right-handed alpha
Helix 21	AC3	B	508	534	Right-handed alpha
Helix 22	AC4	B	534	555	Right-handed alpha
Helix 23	AC5	B	580	598	Right-handed alpha
Helix 24	AC6	B	637	649	Right-handed alpha
Helix 25	AC7	B	685	701	Right-handed alpha
Helix 26	AC8	B	725	732	Right-handed alpha
Helix 27	AC9	B	735	747	Right-handed alpha
Helix 28	AD1	B	770	774	Right-handed 310
Helix 29	AD2	B	775	776	Right-handed 310
Helix 30	AD3	B	777	782	Right-handed alpha
Helix 31	AD4	B	794	797	Right-handed alpha
Helix 32	AD5	B	829	844	Right-handed alpha
Helix 33	AD6	B	855	864	Right-handed alpha
Helix 34	AD7	B	868	887	Right-handed alpha
Helix 35	AD8	B	891	914	Right-handed alpha
Helix 36	AD9	B	918	951	Right-handed alpha
Helix 37	AE1	B	953	980	Right-handed alpha
Helix 38	AE2	B	981	986	Right-handed alpha
Helix 39	AE3	B	990	1032	Right-handed alpha
Helix 40	AE4	A	2	9	Right-handed alpha
Helix 41	AE5	A	9	31	Right-handed alpha
Helix 42	AE6	A	54	62	Right-handed alpha
Helix 43	AE7	A	62	71	Right-handed alpha
Helix 44	AE8	A	99	114	Right-handed alpha
Helix 45	AE9	A	119	126	Right-handed alpha
Helix 46	AF1	A	150	161	Right-handed alpha
Helix 47	AF2	A	161	169	Right-handed alpha
Helix 48	AF3	A	190	197	Right-handed alpha
Helix 49	AF4	A	200	212	Right-handed alpha
Helix 50	AF5	A	243	247	Right-handed 310
Helix 51	AF6	A	263	266	Right-handed alpha
Helix 52	AF7	A	299	317	Right-handed alpha
Helix 53	AF8	A	330	360	Right-handed alpha
Helix 54	AF9	A	362	388	Right-handed alpha
Helix 55	AG1	A	392	424	Right-handed alpha
Helix 56	AG2	A	428	454	Right-handed alpha
Helix 57	AG3	A	463	489	Right-handed alpha
Helix 58	AG4	A	489	499	Right-handed alpha
Helix 59	AG5	A	507	534	Right-handed alpha
Helix 60	AG6	A	534	556	Right-handed alpha
Helix 61	AG7	A	580	598	Right-handed alpha
Helix 62	AG8	A	637	649	Right-handed alpha
Helix 63	AG9	A	685	703	Right-handed alpha
Helix 64	AH1	A	725	732	Right-handed alpha
Helix 65	AH2	A	735	747	Right-handed alpha
Helix 66	AH3	A	776	782	Right-handed alpha
Helix 67	AH4	A	829	846	Right-handed alpha
Helix 68	AH5	A	855	863	Right-handed alpha
Helix 69	AH6	A	865	887	Right-handed alpha
Helix 70	AH7	A	889	897	Right-handed alpha
Helix 71	AH8	A	898	913	Right-handed alpha
Helix 72	AH9	A	918	949	Right-handed alpha
Helix 73	AI1	A	953	985	Right-handed alpha
Helix 74	AI2	A	990	1032	Right-handed alpha
Helix 75	AI3	C	2	9	Right-handed alpha
Helix 76	AI4	C	9	31	Right-handed alpha
Helix 77	AI5	C	54	62	Right-handed alpha
Helix 78	AI6	C	62	71	Right-handed alpha
Helix 79	AI7	C	99	114	Right-handed alpha
Helix 80	AI8	C	119	126	Right-handed alpha
Helix 81	AI9	C	150	161	Right-handed alpha
Helix 82	AJ1	C	161	169	Right-handed alpha
Helix 83	AJ2	C	190	197	Right-handed alpha
Helix 84	AJ3	C	200	212	Right-handed alpha
Helix 85	AJ4	C	243	249	Right-handed alpha
Helix 86	AJ5	C	263	266	Right-handed alpha
Helix 87	AJ6	C	299	317	Right-handed alpha
Helix 88	AJ7	C	330	361	Right-handed alpha
Helix 89	AJ8	C	366	387	Right-handed alpha
Helix 90	AJ9	C	392	424	Right-handed alpha
Helix 91	AK1	C	428	461	Right-handed alpha
Helix 92	AK2	C	463	489	Right-handed alpha
Helix 93	AK3	C	489	499	Right-handed alpha
Helix 94	AK4	C	507	534	Right-handed alpha
Helix 95	AK5	C	534	556	Right-handed alpha
Helix 96	AK6	C	580	598	Right-handed alpha
Helix 97	AK7	C	637	649	Right-handed alpha
Helix 98	AK8	C	685	703	Right-handed alpha
Helix 99	AK9	C	725	732	Right-handed alpha
Helix 100	AL1	C	735	747	Right-handed alpha
Helix 101	AL2	C	769	774	Right-handed alpha
Helix 102	AL3	C	777	782	Right-handed alpha
Helix 103	AL4	C	794	797	Right-handed alpha
Helix 104	AL5	C	829	845	Right-handed alpha
Helix 105	AL6	C	855	862	Right-handed alpha
Helix 106	AL7	C	865	887	Right-handed alpha
Helix 107	AL8	C	891	914	Right-handed alpha
Helix 108	AL9	C	918	949	Right-handed alpha
Helix 109	AM1	C	953	965	Right-handed alpha
Helix 110	AM2	C	965	985	Right-handed alpha
Helix 111	AM3	C	990	1011	Right-handed alpha
Helix 112	AM4	C	1011	1032	Right-handed alpha

There are 25 sheets in PDB entry 8GJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	43	49	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	76	84	anti-parallel
Strand 5	B	809	812	anti-parallel
Strand 6	B	815	823	anti-parallel
Strand 7	B	708	711	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	43	49	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	76	84	anti-parallel
Strand 5	B	809	812	anti-parallel
Strand 6	B	815	823	anti-parallel
Strand 7	B	675	679	anti-parallel
Strand 8	B	850	854	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	288	295	anti-parallel
Strand 3	B	132	144	anti-parallel
Strand 4	B	322	324	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	288	295	anti-parallel
Strand 3	B	132	144	anti-parallel
Strand 4	B	328	329	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	273	first strand
Strand 2	B	183	189	anti-parallel
Strand 3	B	760	768	parallel
Strand 4	B	750	757	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	233	237	anti-parallel
Strand 3	C	718	724	parallel
Strand 4	C	798	804	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	254	first strand
Strand 2	B	260	262	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	279	282	anti-parallel
Strand 3	B	601	610	anti-parallel
Strand 4	B	617	628	anti-parallel
Strand 5	B	568	574	anti-parallel
Strand 6	B	656	661	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	805	first strand
Strand 2	B	717	724	anti-parallel
Strand 3	A	233	237	parallel
Strand 4	A	219	220	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	783	785	first strand
Strand 2	B	791	793	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	132	first strand
Strand 2	A	43	49	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	76	83	anti-parallel
Strand 5	A	809	812	anti-parallel
Strand 6	A	815	824	anti-parallel
Strand 7	A	706	711	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	132	first strand
Strand 2	A	43	49	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	76	83	anti-parallel
Strand 5	A	809	812	anti-parallel
Strand 6	A	815	824	anti-parallel
Strand 7	A	674	680	anti-parallel
Strand 8	A	849	853	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	288	294	anti-parallel
Strand 3	A	136	144	anti-parallel
Strand 4	A	322	329	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	273	first strand
Strand 2	A	183	189	anti-parallel
Strand 3	A	760	768	parallel
Strand 4	A	750	757	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	254	first strand
Strand 2	A	260	262	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	286	first strand
Strand 2	A	279	282	anti-parallel
Strand 3	A	601	608	anti-parallel
Strand 4	A	621	628	anti-parallel
Strand 5	A	568	574	anti-parallel
Strand 6	A	656	661	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	804	first strand
Strand 2	A	718	724	anti-parallel
Strand 3	C	233	238	parallel
Strand 4	C	215	220	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	785	first strand
Strand 2	A	791	793	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	43	49	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	76	84	anti-parallel
Strand 5	C	809	812	anti-parallel
Strand 6	C	815	816	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	176	first strand
Strand 2	C	285	294	anti-parallel
Strand 3	C	136	144	anti-parallel
Strand 4	C	322	329	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	176	first strand
Strand 2	C	285	294	anti-parallel
Strand 3	C	280	282	anti-parallel
Strand 4	C	603	611	anti-parallel
Strand 5	C	616	627	anti-parallel
Strand 6	C	568	574	anti-parallel
Strand 7	C	656	661	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	273	first strand
Strand 2	C	183	189	anti-parallel
Strand 3	C	760	768	parallel
Strand 4	C	750	757	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	254	first strand
Strand 2	C	260	262	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	706	711	first strand
Strand 2	C	819	824	anti-parallel
Strand 3	C	675	680	anti-parallel
Strand 4	C	849	854	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	783	785	first strand
Strand 2	C	791	793	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJK