Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GJR entry

There are 2 chains in PDB entry 8GJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 25ARG 317
A
 VAL 4SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8GJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
66 71Right-handed 310
Helix 2
AA2
C
72 78Right-handed alpha
Helix 3
AA3
C
102 118Right-handed alpha
Helix 4
AA4
C
129 134Right-handed alpha
Helix 5
AA5
C
135 142Right-handed alpha
Helix 6
AA6
C
158 164Right-handed 310
Helix 7
AA7
C
176 183Right-handed alpha
Helix 8
AA8
C
186 193Right-handed alpha
Helix 9
AA9
C
195 207Right-handed alpha
Helix 10
AB1
C
215 228Right-handed alpha
Helix 11
AB2
C
228 241Right-handed alpha
Helix 12
AB3
C
241 253Right-handed alpha
Helix 13
AB4
C
274 281Right-handed alpha
Helix 14
AB5
C
298 303Right-handed alpha
Helix 15
AB6
C
303 317Right-handed alpha
Helix 16
AB7
A
29 33Right-handed 310
Helix 17
AB8
A
63 66Right-handed 310
Helix 18
AB9
A
88 92Right-handed 310
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There are 5 sheets in PDB entry 8GJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 41first strand
Strand 2
C
44 52anti-parallel
Strand 3
C
82 86anti-parallel
Strand 4
C
56 60parallel
Strand 5
C
123 128parallel
Strand 6
C
146 152parallel
Strand 7
C
261 266parallel
Strand 8
C
287 292parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
167 168first strand
Strand 2
C
171 172anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
69 74anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
115 119parallel
Strand 3
A
93 102anti-parallel
Strand 4
A
35 41anti-parallel
Strand 5
A
48 54anti-parallel
Strand 6
A
59 61anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
115 119parallel
Strand 3
A
93 102anti-parallel
Strand 4
A
107 111anti-parallel
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