Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GJU entry

There are 8 chains in PDB entry 8GJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLN 83	ALA 413
F	GLU 82	ALA 413
J	GLN 36	GLN 747
K	GLN 36	GLU 744
L	GLN 36	GLU 744
A	ASP 80	LYS 412
B	ASP 80	ALA 413
H	GLN 36	GLU 744

There are202 helices in PDB entry 8GJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	85	94	Right-handed alpha
Helix 2	AA2	D	97	109	Right-handed alpha
Helix 3	AA3	D	112	137	Right-handed alpha
Helix 4	AA4	D	155	169	Right-handed alpha
Helix 5	AA5	D	223	234	Right-handed alpha
Helix 6	AA6	D	251	256	Right-handed 310
Helix 7	AA7	D	279	283	Right-handed 310
Helix 8	AA8	D	292	294	Right-handed 310
Helix 9	AA9	D	295	310	Right-handed alpha
Helix 10	AB1	D	311	313	Right-handed 310
Helix 11	AB2	D	334	353	Right-handed alpha
Helix 12	AB3	D	353	381	Right-handed alpha
Helix 13	AB4	D	382	387	Right-handed alpha
Helix 14	AB5	D	388	399	Right-handed alpha
Helix 15	AB6	D	403	411	Right-handed alpha
Helix 16	AB7	F	86	95	Right-handed alpha
Helix 17	AB8	F	97	109	Right-handed alpha
Helix 18	AB9	F	112	136	Right-handed alpha
Helix 19	AC1	F	155	165	Right-handed alpha
Helix 20	AC2	F	223	234	Right-handed alpha
Helix 21	AC3	F	252	256	Right-handed 310
Helix 22	AC4	F	278	283	Right-handed 310
Helix 23	AC5	F	292	294	Right-handed 310
Helix 24	AC6	F	295	310	Right-handed alpha
Helix 25	AC7	F	311	313	Right-handed 310
Helix 26	AC8	F	334	353	Right-handed alpha
Helix 27	AC9	F	353	362	Right-handed alpha
Helix 28	AD1	F	363	381	Right-handed alpha
Helix 29	AD2	F	388	398	Right-handed alpha
Helix 30	AD3	F	402	411	Right-handed alpha
Helix 31	AD4	J	40	51	Right-handed alpha
Helix 32	AD5	J	55	60	Right-handed 310
Helix 33	AD6	J	74	79	Right-handed 310
Helix 34	AD7	J	98	102	Right-handed 310
Helix 35	AD8	J	115	128	Right-handed alpha
Helix 36	AD9	J	139	145	Right-handed alpha
Helix 37	AE1	J	150	154	Right-handed 310
Helix 38	AE2	J	166	174	Right-handed alpha
Helix 39	AE3	J	191	207	Right-handed alpha
Helix 40	AE4	J	209	213	Right-handed 310
Helix 41	AE5	J	220	227	Right-handed alpha
Helix 42	AE6	J	234	253	Right-handed alpha
Helix 43	AE7	J	263	270	Right-handed alpha
Helix 44	AE8	J	272	294	Right-handed alpha
Helix 45	AE9	J	297	302	Right-handed alpha
Helix 46	AF1	J	314	338	Right-handed alpha
Helix 47	AF2	J	341	346	Right-handed 310
Helix 48	AF3	J	355	358	Right-handed 310
Helix 49	AF4	J	362	364	Right-handed 310
Helix 50	AF5	J	365	380	Right-handed alpha
Helix 51	AF6	J	391	395	Right-handed 310
Helix 52	AF7	J	398	416	Right-handed alpha
Helix 53	AF8	J	417	421	Right-handed 310
Helix 54	AF9	J	428	451	Right-handed alpha
Helix 55	AG1	J	454	462	Right-handed alpha
Helix 56	AG2	J	463	482	Right-handed alpha
Helix 57	AG3	J	506	524	Right-handed alpha
Helix 58	AG4	J	526	544	Right-handed alpha
Helix 59	AG5	J	547	558	Right-handed alpha
Helix 60	AG6	J	561	574	Right-handed alpha
Helix 61	AG7	J	597	612	Right-handed alpha
Helix 62	AG8	J	630	641	Right-handed alpha
Helix 63	AG9	J	653	665	Right-handed alpha
Helix 64	AH1	J	676	679	Right-handed 310
Helix 65	AH2	J	680	691	Right-handed alpha
Helix 66	AH3	J	706	708	Right-handed 310
Helix 67	AH4	J	709	716	Right-handed alpha
Helix 68	AH5	J	727	742	Right-handed alpha
Helix 69	AH6	K	40	51	Right-handed alpha
Helix 70	AH7	K	55	60	Right-handed 310
Helix 71	AH8	K	74	79	Right-handed 310
Helix 72	AH9	K	98	102	Right-handed 310
Helix 73	AI1	K	115	129	Right-handed alpha
Helix 74	AI2	K	139	145	Right-handed alpha
Helix 75	AI3	K	150	157	Right-handed 310
Helix 76	AI4	K	166	174	Right-handed alpha
Helix 77	AI5	K	191	207	Right-handed alpha
Helix 78	AI6	K	209	213	Right-handed 310
Helix 79	AI7	K	221	228	Right-handed alpha
Helix 80	AI8	K	234	253	Right-handed alpha
Helix 81	AI9	K	263	270	Right-handed alpha
Helix 82	AJ1	K	272	294	Right-handed alpha
Helix 83	AJ2	K	297	302	Right-handed alpha
Helix 84	AJ3	K	314	338	Right-handed alpha
Helix 85	AJ4	K	341	346	Right-handed 310
Helix 86	AJ5	K	355	358	Right-handed 310
Helix 87	AJ6	K	364	380	Right-handed alpha
Helix 88	AJ7	K	391	395	Right-handed 310
Helix 89	AJ8	K	398	416	Right-handed alpha
Helix 90	AJ9	K	417	421	Right-handed 310
Helix 91	AK1	K	428	451	Right-handed alpha
Helix 92	AK2	K	454	462	Right-handed alpha
Helix 93	AK3	K	463	482	Right-handed alpha
Helix 94	AK4	K	506	524	Right-handed alpha
Helix 95	AK5	K	526	544	Right-handed alpha
Helix 96	AK6	K	547	557	Right-handed alpha
Helix 97	AK7	K	561	574	Right-handed alpha
Helix 98	AK8	K	596	612	Right-handed alpha
Helix 99	AK9	K	629	641	Right-handed alpha
Helix 100	AL1	K	653	665	Right-handed alpha
Helix 101	AL2	K	676	679	Right-handed 310
Helix 102	AL3	K	680	692	Right-handed alpha
Helix 103	AL4	K	706	708	Right-handed 310
Helix 104	AL5	K	709	717	Right-handed alpha
Helix 105	AL6	K	727	742	Right-handed alpha
Helix 106	AL7	L	40	49	Right-handed alpha
Helix 107	AL8	L	55	60	Right-handed 310
Helix 108	AL9	L	74	79	Right-handed 310
Helix 109	AM1	L	98	102	Right-handed 310
Helix 110	AM2	L	115	128	Right-handed alpha
Helix 111	AM3	L	139	145	Right-handed alpha
Helix 112	AM4	L	150	157	Right-handed 310
Helix 113	AM5	L	166	174	Right-handed alpha
Helix 114	AM6	L	191	207	Right-handed alpha
Helix 115	AM7	L	209	213	Right-handed 310
Helix 116	AM8	L	221	227	Right-handed alpha
Helix 117	AM9	L	234	253	Right-handed alpha
Helix 118	AN1	L	263	270	Right-handed alpha
Helix 119	AN2	L	272	294	Right-handed alpha
Helix 120	AN3	L	297	302	Right-handed alpha
Helix 121	AN4	L	314	338	Right-handed alpha
Helix 122	AN5	L	341	346	Right-handed 310
Helix 123	AN6	L	364	380	Right-handed alpha
Helix 124	AN7	L	391	395	Right-handed 310
Helix 125	AN8	L	398	415	Right-handed alpha
Helix 126	AN9	L	417	421	Right-handed 310
Helix 127	AO1	L	428	448	Right-handed alpha
Helix 128	AO2	L	454	462	Right-handed alpha
Helix 129	AO3	L	462	482	Right-handed alpha
Helix 130	AO4	L	506	524	Right-handed alpha
Helix 131	AO5	L	526	544	Right-handed alpha
Helix 132	AO6	L	547	558	Right-handed alpha
Helix 133	AO7	L	561	571	Right-handed alpha
Helix 134	AO8	L	596	612	Right-handed alpha
Helix 135	AO9	L	629	642	Right-handed alpha
Helix 136	AP1	L	653	665	Right-handed alpha
Helix 137	AP2	L	677	692	Right-handed alpha
Helix 138	AP3	L	727	742	Right-handed alpha
Helix 139	AP4	L	743	744	Right-handed 310
Helix 140	AP5	A	80	81	Right-handed 310
Helix 141	AP6	A	82	95	Right-handed alpha
Helix 142	AP7	A	97	109	Right-handed alpha
Helix 143	AP8	A	112	137	Right-handed alpha
Helix 144	AP9	A	155	170	Right-handed alpha
Helix 145	AQ1	A	223	234	Right-handed alpha
Helix 146	AQ2	A	252	256	Right-handed 310
Helix 147	AQ3	A	278	283	Right-handed 310
Helix 148	AQ4	A	292	294	Right-handed 310
Helix 149	AQ5	A	295	310	Right-handed alpha
Helix 150	AQ6	A	311	313	Right-handed 310
Helix 151	AQ7	A	334	353	Right-handed alpha
Helix 152	AQ8	A	353	381	Right-handed alpha
Helix 153	AQ9	A	384	399	Right-handed alpha
Helix 154	AR1	A	402	411	Right-handed alpha
Helix 155	AR2	B	82	96	Right-handed alpha
Helix 156	AR3	B	97	109	Right-handed alpha
Helix 157	AR4	B	112	137	Right-handed alpha
Helix 158	AR5	B	155	169	Right-handed alpha
Helix 159	AR6	B	223	234	Right-handed alpha
Helix 160	AR7	B	251	256	Right-handed 310
Helix 161	AR8	B	292	294	Right-handed 310
Helix 162	AR9	B	295	310	Right-handed alpha
Helix 163	AS1	B	334	353	Right-handed alpha
Helix 164	AS2	B	353	381	Right-handed alpha
Helix 165	AS3	B	382	387	Right-handed alpha
Helix 166	AS4	B	388	398	Right-handed alpha
Helix 167	AS5	B	402	411	Right-handed alpha
Helix 168	AS6	H	40	51	Right-handed alpha
Helix 169	AS7	H	55	60	Right-handed 310
Helix 170	AS8	H	74	79	Right-handed 310
Helix 171	AS9	H	98	102	Right-handed 310
Helix 172	AT1	H	115	128	Right-handed alpha
Helix 173	AT2	H	139	145	Right-handed alpha
Helix 174	AT3	H	150	157	Right-handed 310
Helix 175	AT4	H	166	174	Right-handed alpha
Helix 176	AT5	H	191	206	Right-handed alpha
Helix 177	AT6	H	209	213	Right-handed 310
Helix 178	AT7	H	221	227	Right-handed alpha
Helix 179	AT8	H	234	253	Right-handed alpha
Helix 180	AT9	H	263	270	Right-handed alpha
Helix 181	AU1	H	272	294	Right-handed alpha
Helix 182	AU2	H	297	302	Right-handed alpha
Helix 183	AU3	H	314	337	Right-handed alpha
Helix 184	AU4	H	341	346	Right-handed 310
Helix 185	AU5	H	355	358	Right-handed 310
Helix 186	AU6	H	364	381	Right-handed alpha
Helix 187	AU7	H	398	416	Right-handed alpha
Helix 188	AU8	H	417	421	Right-handed 310
Helix 189	AU9	H	428	451	Right-handed alpha
Helix 190	AV1	H	454	462	Right-handed alpha
Helix 191	AV2	H	462	482	Right-handed alpha
Helix 192	AV3	H	506	524	Right-handed alpha
Helix 193	AV4	H	526	544	Right-handed alpha
Helix 194	AV5	H	547	558	Right-handed alpha
Helix 195	AV6	H	561	574	Right-handed alpha
Helix 196	AV7	H	597	612	Right-handed alpha
Helix 197	AV8	H	631	642	Right-handed alpha
Helix 198	AV9	H	653	665	Right-handed alpha
Helix 199	AW1	H	680	692	Right-handed alpha
Helix 200	AW2	H	707	709	Right-handed 310
Helix 201	AW3	H	710	715	Right-handed alpha
Helix 202	AW4	H	727	743	Right-handed alpha

There are 16 sheets in PDB entry 8GJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	212	first strand
Strand 2	D	174	180	parallel
Strand 3	D	238	242	parallel
Strand 4	D	144	149	parallel
Strand 5	D	259	264	parallel
Strand 6	D	285	288	parallel
Strand 7	D	323	326	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	191	first strand
Strand 2	K	644	647	parallel
Strand 3	K	616	622	parallel
Strand 4	K	668	673	parallel
Strand 5	K	698	703	parallel
Strand 6	K	721	722	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	212	first strand
Strand 2	F	174	180	parallel
Strand 3	F	238	242	parallel
Strand 4	F	144	149	parallel
Strand 5	F	259	264	parallel
Strand 6	F	285	288	parallel
Strand 7	F	323	326	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	61	62	first strand
Strand 2	J	68	69	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	256	257	first strand
Strand 2	J	215	217	parallel
Strand 3	J	184	186	parallel
Strand 4	J	133	136	parallel
Strand 5	J	106	111	parallel
Strand 6	J	384	386	parallel
Strand 7	J	348	353	parallel
Strand 8	J	305	311	parallel
Strand 9	J	259	262	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	644	647	first strand
Strand 2	J	616	621	parallel
Strand 3	J	668	672	parallel
Strand 4	J	698	702	parallel
Strand 5	J	721	722	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	62	first strand
Strand 2	K	68	69	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	256	257	first strand
Strand 2	K	215	217	parallel
Strand 3	K	184	186	parallel
Strand 4	K	133	136	parallel
Strand 5	K	106	111	parallel
Strand 6	K	384	386	parallel
Strand 7	K	348	353	parallel
Strand 8	K	305	311	parallel
Strand 9	K	259	262	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	61	62	first strand
Strand 2	L	68	69	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	256	257	first strand
Strand 2	L	214	217	parallel
Strand 3	L	183	186	parallel
Strand 4	L	133	136	parallel
Strand 5	L	106	111	parallel
Strand 6	L	384	386	parallel
Strand 7	L	348	353	parallel
Strand 8	L	305	311	parallel
Strand 9	L	259	262	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	721	722	first strand
Strand 2	L	698	703	parallel
Strand 3	L	668	673	parallel
Strand 4	L	616	621	parallel
Strand 5	L	644	647	parallel
Strand 6	B	189	191	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	212	first strand
Strand 2	A	174	180	parallel
Strand 3	A	238	242	parallel
Strand 4	A	144	149	parallel
Strand 5	A	259	264	parallel
Strand 6	A	285	288	parallel
Strand 7	A	323	326	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	H	644	647	parallel
Strand 3	H	616	621	parallel
Strand 4	H	668	672	parallel
Strand 5	H	698	702	parallel
Strand 6	H	718	722	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	212	first strand
Strand 2	B	174	180	parallel
Strand 3	B	238	245	parallel
Strand 4	B	144	150	parallel
Strand 5	B	259	264	parallel
Strand 6	B	285	288	parallel
Strand 7	B	323	326	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	62	first strand
Strand 2	H	68	69	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	256	257	first strand
Strand 2	H	215	217	parallel
Strand 3	H	184	186	parallel
Strand 4	H	133	136	parallel
Strand 5	H	106	111	parallel
Strand 6	H	384	386	parallel
Strand 7	H	348	353	parallel
Strand 8	H	305	311	parallel
Strand 9	H	259	262	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJU