Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GJW entry

There is 1 chain in PDB entry 8GJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 288TRP 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8GJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
289 304Right-handed alpha
Helix 2
AA2
A
307 327Right-handed alpha
Helix 3
AA3
A
340 345Right-handed alpha
Helix 4
AA4
A
388 392Right-handed 310
Helix 5
AA5
A
399 417Right-handed alpha
Helix 6
AA6
A
420 424Right-handed 310
Helix 7
AA7
A
478 486Right-handed alpha
Helix 8
AA8
A
502 506Right-handed 310
Helix 9
AA9
A
511 521Right-handed alpha
Helix 10
AB1
A
529 548Right-handed alpha
Helix 11
AB2
A
556 571Right-handed alpha
Helix 12
AB3
A
575 577Right-handed 310
Helix 13
AB4
A
578 597Right-handed alpha
Helix 14
AB5
A
614 630Right-handed alpha
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There are 2 sheets in PDB entry 8GJW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
354 360anti-parallel
Strand 3
A
452 462parallel
Strand 4
A
489 492anti-parallel
Strand 5
A
507 510anti-parallel
Strand 6
A
375 380anti-parallel
Strand 7
A
364 367anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
354 360anti-parallel
Strand 3
A
452 462parallel
Strand 4
A
438 442anti-parallel
Strand 5
A
426 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il