Analysis of interatomic Contacts of Structural Units in PDB entry:
8GJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GJY entry

There is 1 chain in PDB entry 8GJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 8LYS 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8GJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 52Right-handed alpha
Helix 2
AA2
A
53 56Right-handed 310
Helix 3
AA3
A
86 88Right-handed 310
Helix 4
AA4
A
113 125Right-handed 310
Helix 5
AA5
A
133 155Right-handed alpha
Helix 6
AA6
A
195 198Right-handed 310
Helix 7
AA7
A
199 204Right-handed alpha
Helix 8
AA8
A
211 222Right-handed alpha
Helix 9
AA9
A
248 257Right-handed alpha
Helix 10
AB1
A
267 282Right-handed alpha
Helix 11
AB2
A
288 303Right-handed alpha
Helix 12
AB3
A
305 312Right-handed 310
Helix 13
AB4
A
313 332Right-handed alpha
Helix 14
AB5
A
349 366Right-handed alpha
Helix 15
AB6
A
366 376Right-handed alpha
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There are 2 sheets in PDB entry 8GJY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
76 84anti-parallel
Strand 3
A
179 191parallel
Strand 4
A
223 226anti-parallel
Strand 5
A
244 247anti-parallel
Strand 6
A
107 108anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
76 84anti-parallel
Strand 3
A
179 191parallel
Strand 4
A
170 176anti-parallel
Strand 5
A
161 163anti-parallel
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