Analysis of interatomic Contacts of Structural Units in PDB entry:
8GK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GK6 entry

There are 6 chains in PDB entry 8GK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 24SER 152
B
 SER 24THR 153
C
 ASN 25THR 153
D
 ASN 25SER 152
E
 ASN 25SER 152
F
 ASN 25ASN 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8GK6

There are 18 sheets in PDB entry 8GK6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
43 45anti-parallel
Strand 3
A
147 149parallel
Strand 4
A
115 126anti-parallel
Strand 5
A
131 136anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
43 45anti-parallel
Strand 3
A
147 149parallel
Strand 4
A
115 126anti-parallel
Strand 5
A
64 70anti-parallel
Strand 6
A
89 95anti-parallel
Strand 7
A
98 104anti-parallel
Strand 8
A
51 59anti-parallel
Strand 9
A
27 33anti-parallel
Strand 10
A
138 139parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
43 45anti-parallel
Strand 3
B
147 149parallel
Strand 4
B
115 126anti-parallel
Strand 5
B
131 136anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
43 45anti-parallel
Strand 3
B
147 149parallel
Strand 4
B
115 126anti-parallel
Strand 5
B
64 70anti-parallel
Strand 6
B
89 95anti-parallel
Strand 7
B
98 104anti-parallel
Strand 8
B
51 59anti-parallel
Strand 9
B
27 33anti-parallel
Strand 10
B
138 139parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
43 45anti-parallel
Strand 3
C
147 149parallel
Strand 4
C
115 126anti-parallel
Strand 5
C
131 136anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
43 45anti-parallel
Strand 3
C
147 149parallel
Strand 4
C
115 126anti-parallel
Strand 5
C
64 70anti-parallel
Strand 6
C
89 95anti-parallel
Strand 7
C
98 104anti-parallel
Strand 8
C
51 59anti-parallel
Strand 9
C
27 33anti-parallel
Strand 10
C
138 139parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 40first strand
Strand 2
D
43 45anti-parallel
Strand 3
D
147 149parallel
Strand 4
D
115 126anti-parallel
Strand 5
D
131 136anti-parallel
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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 40first strand
Strand 2
D
43 45anti-parallel
Strand 3
D
147 149parallel
Strand 4
D
115 126anti-parallel
Strand 5
D
64 70anti-parallel
Strand 6
D
89 95anti-parallel
Strand 7
D
98 104anti-parallel
Strand 8
D
51 59anti-parallel
Strand 9
D
27 33anti-parallel
Strand 10
D
138 139parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
92 95first strand
Strand 2
E
98 104anti-parallel
Strand 3
E
51 59anti-parallel
Strand 4
E
27 33anti-parallel
Strand 5
E
138 139parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 40first strand
Strand 2
E
43 45anti-parallel
Strand 3
E
147 149parallel
Strand 4
E
115 126anti-parallel
Strand 5
E
64 70anti-parallel
Strand 6
E
89 90anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 40first strand
Strand 2
E
43 45anti-parallel
Strand 3
E
147 149parallel
Strand 4
E
115 126anti-parallel
Strand 5
E
131 136anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
92 95first strand
Strand 2
F
98 104anti-parallel
Strand 3
F
51 59anti-parallel
Strand 4
F
27 33anti-parallel
Strand 5
F
138 139parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 40first strand
Strand 2
F
43 45anti-parallel
Strand 3
F
147 149parallel
Strand 4
F
115 126anti-parallel
Strand 5
F
64 70anti-parallel
Strand 6
F
89 90anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 40first strand
Strand 2
F
43 45anti-parallel
Strand 3
F
147 149parallel
Strand 4
F
115 126anti-parallel
Strand 5
F
131 136anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
38 40first strand
Strand 2
H
43 45anti-parallel
Strand 3
H
147 149parallel
Strand 4
H
115 127anti-parallel
Strand 5
H
130 136anti-parallel
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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
38 40first strand
Strand 2
H
43 45anti-parallel
Strand 3
H
147 149parallel
Strand 4
H
115 127anti-parallel
Strand 5
H
64 70anti-parallel
Strand 6
H
89 92anti-parallel
Strand 7
H
98 104anti-parallel
Strand 8
H
51 59anti-parallel
Strand 9
H
27 33anti-parallel
Strand 10
H
138 139parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
38 40first strand
Strand 2
G
43 45anti-parallel
Strand 3
G
147 149parallel
Strand 4
G
115 126anti-parallel
Strand 5
G
131 136anti-parallel
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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
38 40first strand
Strand 2
G
43 45anti-parallel
Strand 3
G
147 149parallel
Strand 4
G
115 126anti-parallel
Strand 5
G
64 70anti-parallel
Strand 6
G
89 95anti-parallel
Strand 7
G
98 104anti-parallel
Strand 8
G
51 59anti-parallel
Strand 9
G
27 33anti-parallel
Strand 10
G
138 139parallel
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