Analysis of interatomic Contacts of Structural Units in PDB entry:
8GK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GK7 entry

There are 2 chains in PDB entry 8GK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6GLN 569
B
 LYS 6GLN 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8GK7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 14Right-handed alpha
Helix 2
AA2
A
15 17Right-handed 310
Helix 3
AA3
A
18 52Right-handed alpha
Helix 4
AA4
A
62 74Right-handed alpha
Helix 5
AA5
A
75 105Right-handed alpha
Helix 6
AA6
A
106 113Right-handed alpha
Helix 7
AA7
A
114 124Right-handed alpha
Helix 8
AA8
A
124 158Right-handed alpha
Helix 9
AA9
A
158 163Right-handed alpha
Helix 10
AB1
A
164 166Right-handed 310
Helix 11
AB2
A
168 214Right-handed alpha
Helix 12
AB3
A
216 244Right-handed alpha
Helix 13
AB4
A
245 265Right-handed alpha
Helix 14
AB5
A
274 318Right-handed alpha
Helix 15
AB6
A
373 382Right-handed alpha
Helix 16
AB7
A
403 409Right-handed alpha
Helix 17
AB8
A
424 430Right-handed alpha
Helix 18
AB9
A
440 449Right-handed alpha
Helix 19
AC1
A
476 489Right-handed alpha
Helix 20
AC2
A
504 518Right-handed alpha
Helix 21
AC3
A
531 536Right-handed alpha
Helix 22
AC4
A
553 561Right-handed alpha
Helix 23
AC5
A
561 567Right-handed alpha
Helix 24
AC6
B
7 14Right-handed alpha
Helix 25
AC7
B
15 17Right-handed 310
Helix 26
AC8
B
18 52Right-handed alpha
Helix 27
AC9
B
62 74Right-handed alpha
Helix 28
AD1
B
75 105Right-handed alpha
Helix 29
AD2
B
106 113Right-handed alpha
Helix 30
AD3
B
114 124Right-handed alpha
Helix 31
AD4
B
124 158Right-handed alpha
Helix 32
AD5
B
158 163Right-handed alpha
Helix 33
AD6
B
164 166Right-handed 310
Helix 34
AD7
B
168 214Right-handed alpha
Helix 35
AD8
B
216 265Right-handed alpha
Helix 36
AD9
B
274 298Right-handed alpha
Helix 37
AE1
B
298 318Right-handed alpha
Helix 38
AE2
B
373 383Right-handed alpha
Helix 39
AE3
B
403 409Right-handed alpha
Helix 40
AE4
B
424 430Right-handed alpha
Helix 41
AE5
B
440 450Right-handed alpha
Helix 42
AE6
B
476 489Right-handed alpha
Helix 43
AE7
B
504 518Right-handed alpha
Helix 44
AE8
B
531 536Right-handed alpha
Helix 45
AE9
B
553 561Right-handed alpha
Helix 46
AF1
B
561 567Right-handed alpha
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There are 4 sheets in PDB entry 8GK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
391 394anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
494 497parallel
Strand 3
A
525 527parallel
Strand 4
A
365 367parallel
Strand 5
A
540 544parallel
Strand 6
A
547 552anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 338first strand
Strand 2
B
391 394anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 413first strand
Strand 2
B
494 497parallel
Strand 3
B
525 527parallel
Strand 4
B
365 367parallel
Strand 5
B
540 544parallel
Strand 6
B
547 552anti-parallel
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