Analysis of interatomic Contacts of Structural Units in PDB entry:
8GK8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GK8 entry

There are 2 chains in PDB entry 8GK8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 2	GLU 1114
B	GLN 3	LEU 323

There are194 helices in PDB entry 8GK8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	13	26	Right-handed alpha
Helix 2	AA2	C	36	46	Right-handed 310
Helix 3	AA3	C	60	64	Right-handed 310
Helix 4	AA4	C	65	76	Right-handed alpha
Helix 5	AA5	C	91	101	Right-handed alpha
Helix 6	AA6	C	109	117	Right-handed alpha
Helix 7	AA7	C	118	129	Right-handed alpha
Helix 8	AA8	C	251	269	Right-handed alpha
Helix 9	AA9	C	298	307	Right-handed alpha
Helix 10	AB1	C	309	320	Right-handed alpha
Helix 11	AB2	C	332	336	Right-handed 310
Helix 12	AB3	C	404	419	Right-handed alpha
Helix 13	AB4	C	427	437	Right-handed alpha
Helix 14	AB5	C	437	442	Right-handed alpha
Helix 15	AB6	C	464	480	Right-handed alpha
Helix 16	AB7	C	501	508	Right-handed alpha
Helix 17	AB8	C	510	516	Right-handed alpha
Helix 18	AB9	C	519	528	Right-handed alpha
Helix 19	AC1	C	542	548	Right-handed alpha
Helix 20	AC2	C	553	560	Right-handed alpha
Helix 21	AC3	C	560	568	Right-handed alpha
Helix 22	AC4	C	580	588	Right-handed alpha
Helix 23	AC5	C	592	604	Right-handed alpha
Helix 24	AC6	C	625	640	Right-handed alpha
Helix 25	AC7	C	653	655	Right-handed 310
Helix 26	AC8	C	656	666	Right-handed alpha
Helix 27	AC9	C	690	704	Right-handed alpha
Helix 28	AD1	C	719	732	Right-handed alpha
Helix 29	AD2	C	748	759	Right-handed alpha
Helix 30	AD3	C	768	772	Right-handed 310
Helix 31	AD4	C	779	787	Right-handed alpha
Helix 32	AD5	C	797	815	Right-handed alpha
Helix 33	AD6	C	816	819	Right-handed 310
Helix 34	AD7	C	828	833	Right-handed alpha
Helix 35	AD8	C	837	848	Right-handed alpha
Helix 36	AD9	C	851	853	Right-handed 310
Helix 37	AE1	C	854	869	Right-handed alpha
Helix 38	AE2	C	877	892	Right-handed alpha
Helix 39	AE3	C	909	916	Right-handed alpha
Helix 40	AE4	C	928	937	Right-handed alpha
Helix 41	AE5	C	945	950	Right-handed alpha
Helix 42	AE6	C	954	967	Right-handed alpha
Helix 43	AE7	C	971	981	Right-handed alpha
Helix 44	AE8	C	981	996	Right-handed alpha
Helix 45	AE9	C	1002	1009	Right-handed alpha
Helix 46	AF1	B	12	26	Right-handed alpha
Helix 47	AF2	B	35	39	Right-handed 310
Helix 48	AF3	B	42	46	Right-handed 310
Helix 49	AF4	B	58	64	Right-handed 310
Helix 50	AF5	B	65	76	Right-handed alpha
Helix 51	AF6	B	91	101	Right-handed alpha
Helix 52	AF7	B	109	116	Right-handed alpha
Helix 53	AF8	B	118	129	Right-handed alpha
Helix 54	AF9	B	143	155	Right-handed alpha
Helix 55	AG1	B	176	194	Right-handed alpha
Helix 56	AG2	B	251	269	Right-handed alpha
Helix 57	AG3	B	298	307	Right-handed alpha
Helix 58	AG4	B	309	319	Right-handed alpha
Helix 59	AG5	B	332	336	Right-handed 310
Helix 60	AG6	B	404	419	Right-handed alpha
Helix 61	AG7	B	427	437	Right-handed alpha
Helix 62	AG8	B	437	442	Right-handed alpha
Helix 63	AG9	B	453	458	Right-handed 310
Helix 64	AH1	B	464	480	Right-handed alpha
Helix 65	AH2	B	501	508	Right-handed alpha
Helix 66	AH3	B	510	518	Right-handed alpha
Helix 67	AH4	B	519	530	Right-handed alpha
Helix 68	AH5	B	541	547	Right-handed alpha
Helix 69	AH6	B	553	559	Right-handed alpha
Helix 70	AH7	B	560	568	Right-handed alpha
Helix 71	AH8	B	569	571	Right-handed 310
Helix 72	AH9	B	580	588	Right-handed alpha
Helix 73	AI1	B	592	604	Right-handed alpha
Helix 74	AI2	B	625	640	Right-handed alpha
Helix 75	AI3	B	652	667	Right-handed alpha
Helix 76	AI4	B	690	704	Right-handed alpha
Helix 77	AI5	B	719	734	Right-handed alpha
Helix 78	AI6	B	748	760	Right-handed alpha
Helix 79	AI7	B	768	772	Right-handed 310
Helix 80	AI8	B	779	787	Right-handed alpha
Helix 81	AI9	B	798	812	Right-handed alpha
Helix 82	AJ1	B	813	819	Right-handed 310
Helix 83	AJ2	B	828	833	Right-handed alpha
Helix 84	AJ3	B	838	849	Right-handed alpha
Helix 85	AJ4	B	851	854	Right-handed 310
Helix 86	AJ5	B	855	870	Right-handed alpha
Helix 87	AJ6	B	877	893	Right-handed alpha
Helix 88	AJ7	B	895	902	Right-handed alpha
Helix 89	AJ8	B	903	905	Right-handed 310
Helix 90	AJ9	B	909	917	Right-handed alpha
Helix 91	AK1	B	931	937	Right-handed alpha
Helix 92	AK2	B	945	950	Right-handed alpha
Helix 93	AK3	B	954	967	Right-handed alpha
Helix 94	AK4	B	971	981	Right-handed alpha
Helix 95	AK5	B	981	996	Right-handed alpha
Helix 96	AK6	B	997	1001	Right-handed 310
Helix 97	AK7	B	1002	1009	Right-handed alpha
Helix 98	AK8	B	1047	1051	Right-handed 310
Helix 99	AK9	D	12	26	Right-handed alpha
Helix 100	AL1	D	35	39	Right-handed 310
Helix 101	AL2	D	42	47	Right-handed alpha
Helix 102	AL3	D	65	77	Right-handed alpha
Helix 103	AL4	D	91	101	Right-handed alpha
Helix 104	AL5	D	111	117	Right-handed alpha
Helix 105	AL6	D	118	130	Right-handed alpha
Helix 106	AL7	D	253	269	Right-handed alpha
Helix 107	AL8	D	298	307	Right-handed alpha
Helix 108	AL9	D	309	319	Right-handed alpha
Helix 109	AM1	D	404	419	Right-handed alpha
Helix 110	AM2	D	427	437	Right-handed alpha
Helix 111	AM3	D	437	442	Right-handed alpha
Helix 112	AM4	D	465	480	Right-handed alpha
Helix 113	AM5	D	501	506	Right-handed alpha
Helix 114	AM6	D	510	516	Right-handed alpha
Helix 115	AM7	D	519	530	Right-handed alpha
Helix 116	AM8	D	541	549	Right-handed alpha
Helix 117	AM9	D	553	559	Right-handed alpha
Helix 118	AN1	D	560	568	Right-handed alpha
Helix 119	AN2	D	569	571	Right-handed 310
Helix 120	AN3	D	580	588	Right-handed alpha
Helix 121	AN4	D	592	604	Right-handed alpha
Helix 122	AN5	D	625	640	Right-handed alpha
Helix 123	AN6	D	652	656	Right-handed 310
Helix 124	AN7	D	657	667	Right-handed alpha
Helix 125	AN8	D	690	704	Right-handed alpha
Helix 126	AN9	D	719	734	Right-handed alpha
Helix 127	AO1	D	748	759	Right-handed alpha
Helix 128	AO2	D	768	772	Right-handed 310
Helix 129	AO3	D	779	787	Right-handed alpha
Helix 130	AO4	D	797	814	Right-handed alpha
Helix 131	AO5	D	815	819	Right-handed 310
Helix 132	AO6	D	828	833	Right-handed alpha
Helix 133	AO7	D	837	849	Right-handed alpha
Helix 134	AO8	D	855	869	Right-handed alpha
Helix 135	AO9	D	877	892	Right-handed alpha
Helix 136	AP1	D	895	902	Right-handed alpha
Helix 137	AP2	D	910	917	Right-handed alpha
Helix 138	AP3	D	928	937	Right-handed alpha
Helix 139	AP4	D	945	950	Right-handed 310
Helix 140	AP5	D	954	966	Right-handed alpha
Helix 141	AP6	D	971	981	Right-handed alpha
Helix 142	AP7	D	981	996	Right-handed alpha
Helix 143	AP8	D	997	1001	Right-handed 310
Helix 144	AP9	D	1002	1009	Right-handed alpha
Helix 145	AQ1	A	12	24	Right-handed alpha
Helix 146	AQ2	A	42	46	Right-handed 310
Helix 147	AQ3	A	60	64	Right-handed 310
Helix 148	AQ4	A	65	76	Right-handed alpha
Helix 149	AQ5	A	91	101	Right-handed alpha
Helix 150	AQ6	A	109	116	Right-handed alpha
Helix 151	AQ7	A	120	129	Right-handed alpha
Helix 152	AQ8	A	143	155	Right-handed alpha
Helix 153	AQ9	A	176	193	Right-handed alpha
Helix 154	AR1	A	251	269	Right-handed alpha
Helix 155	AR2	A	298	307	Right-handed alpha
Helix 156	AR3	A	309	319	Right-handed alpha
Helix 157	AR4	A	332	336	Right-handed 310
Helix 158	AR5	A	404	419	Right-handed alpha
Helix 159	AR6	A	427	436	Right-handed alpha
Helix 160	AR7	A	437	442	Right-handed alpha
Helix 161	AR8	A	448	453	Right-handed alpha
Helix 162	AR9	A	454	458	Right-handed 310
Helix 163	AS1	A	464	480	Right-handed alpha
Helix 164	AS2	A	501	508	Right-handed alpha
Helix 165	AS3	A	510	518	Right-handed alpha
Helix 166	AS4	A	519	529	Right-handed alpha
Helix 167	AS5	A	541	548	Right-handed alpha
Helix 168	AS6	A	553	560	Right-handed alpha
Helix 169	AS7	A	560	568	Right-handed alpha
Helix 170	AS8	A	569	571	Right-handed 310
Helix 171	AS9	A	580	588	Right-handed alpha
Helix 172	AT1	A	592	604	Right-handed alpha
Helix 173	AT2	A	625	640	Right-handed alpha
Helix 174	AT3	A	656	667	Right-handed alpha
Helix 175	AT4	A	690	704	Right-handed alpha
Helix 176	AT5	A	719	734	Right-handed alpha
Helix 177	AT6	A	748	759	Right-handed alpha
Helix 178	AT7	A	768	772	Right-handed 310
Helix 179	AT8	A	779	787	Right-handed alpha
Helix 180	AT9	A	797	814	Right-handed alpha
Helix 181	AU1	A	815	819	Right-handed 310
Helix 182	AU2	A	828	833	Right-handed alpha
Helix 183	AU3	A	837	848	Right-handed alpha
Helix 184	AU4	A	854	869	Right-handed alpha
Helix 185	AU5	A	877	892	Right-handed alpha
Helix 186	AU6	A	895	902	Right-handed alpha
Helix 187	AU7	A	910	918	Right-handed alpha
Helix 188	AU8	A	928	937	Right-handed alpha
Helix 189	AU9	A	945	950	Right-handed alpha
Helix 190	AV1	A	954	966	Right-handed alpha
Helix 191	AV2	A	971	981	Right-handed alpha
Helix 192	AV3	A	981	996	Right-handed alpha
Helix 193	AV4	A	997	1001	Right-handed 310
Helix 194	AV5	A	1002	1009	Right-handed alpha

There are 25 sheets in PDB entry 8GK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	29	34	parallel
Strand 3	C	6	9	parallel
Strand 4	C	80	82	parallel
Strand 5	C	104	105	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	292	first strand
Strand 2	C	273	282	anti-parallel
Strand 3	C	210	218	anti-parallel
Strand 4	C	224	235	anti-parallel
Strand 5	C	240	245	anti-parallel
Strand 6	C	342	348	anti-parallel
Strand 7	C	394	400	anti-parallel
Strand 8	C	374	378	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	367	first strand
Strand 2	C	420	422	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	537	first strand
Strand 2	C	573	578	parallel
Strand 3	C	608	614	parallel
Strand 4	C	643	647	parallel
Strand 5	C	669	675	parallel
Strand 6	C	708	712	parallel
Strand 7	C	738	741	parallel
Strand 8	C	763	766	parallel
Strand 9	C	534	537	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1015	1019	first strand
Strand 2	C	1025	1033	anti-parallel
Strand 3	C	1041	1048	anti-parallel
Strand 4	C	1051	1058	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	29	34	parallel
Strand 3	B	6	9	parallel
Strand 4	B	80	82	parallel
Strand 5	B	104	105	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	158	161	anti-parallel
Strand 3	B	201	204	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	231	first strand
Strand 2	B	210	218	anti-parallel
Strand 3	B	273	282	anti-parallel
Strand 4	B	285	292	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	341	347	anti-parallel
Strand 3	B	396	402	anti-parallel
Strand 4	B	375	378	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	367	first strand
Strand 2	B	420	422	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	537	first strand
Strand 2	B	573	578	parallel
Strand 3	B	608	614	parallel
Strand 4	B	643	647	parallel
Strand 5	B	669	675	parallel
Strand 6	B	708	713	parallel
Strand 7	B	738	742	parallel
Strand 8	B	763	766	parallel
Strand 9	B	534	537	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1015	1021	first strand
Strand 2	B	1024	1029	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1032	1033	first strand
Strand 2	B	1042	1045	anti-parallel
Strand 3	B	1054	1057	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	29	34	parallel
Strand 3	D	6	9	parallel
Strand 4	D	80	82	parallel
Strand 5	D	104	105	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	290	first strand
Strand 2	D	273	282	anti-parallel
Strand 3	D	210	218	anti-parallel
Strand 4	D	225	236	anti-parallel
Strand 5	D	239	245	anti-parallel
Strand 6	D	341	346	anti-parallel
Strand 7	D	397	402	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	534	537	first strand
Strand 2	D	573	578	parallel
Strand 3	D	608	614	parallel
Strand 4	D	643	647	parallel
Strand 5	D	669	675	parallel
Strand 6	D	708	713	parallel
Strand 7	D	738	742	parallel
Strand 8	D	763	766	parallel
Strand 9	D	534	537	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1015	1021	first strand
Strand 2	D	1024	1033	anti-parallel
Strand 3	D	1041	1048	anti-parallel
Strand 4	D	1051	1058	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1106	1109	first strand
Strand 2	D	1114	1117	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	29	34	parallel
Strand 3	A	6	9	parallel
Strand 4	A	80	82	parallel
Strand 5	A	104	105	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	203	204	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	292	first strand
Strand 2	A	273	282	anti-parallel
Strand 3	A	210	218	anti-parallel
Strand 4	A	224	235	anti-parallel
Strand 5	A	240	245	anti-parallel
Strand 6	A	341	348	anti-parallel
Strand 7	A	394	402	anti-parallel
Strand 8	A	374	378	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	386	387	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	420	422	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	A	573	578	parallel
Strand 3	A	608	614	parallel
Strand 4	A	643	647	parallel
Strand 5	A	670	675	parallel
Strand 6	A	708	712	parallel
Strand 7	A	738	741	parallel
Strand 8	A	763	766	parallel
Strand 9	A	534	537	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1015	1021	first strand
Strand 2	A	1024	1033	anti-parallel
Strand 3	A	1041	1048	anti-parallel
Strand 4	A	1051	1058	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GK8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GK8