Analysis of interatomic Contacts of Structural Units in PDB entry:
8GKF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GKF entry

There are 9 chains in PDB entry 8GKF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	ALA 228
B	THR 5	GLY 229
C	THR 5	GLY 229
D	THR 5	GLY 229
E	THR 5	ALA 228
F	LEU 6	LEU 227
G	THR 5	GLY 229
H	THR 5	GLY 229
I	THR 5	GLY 229

There are 65 helices in PDB entry 8GKF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	11	Right-handed 310
Helix 2	AA2	A	34	42	Right-handed 310
Helix 3	AA3	A	45	65	Right-handed alpha
Helix 4	AA4	A	76	80	Right-handed 310
Helix 5	AA5	A	124	129	Right-handed alpha
Helix 6	AA6	A	131	142	Right-handed alpha
Helix 7	AA7	A	147	168	Right-handed alpha
Helix 8	AA8	B	6	11	Right-handed 310
Helix 9	AA9	B	37	42	Right-handed 310
Helix 10	AB1	B	45	66	Right-handed alpha
Helix 11	AB2	B	76	80	Right-handed 310
Helix 12	AB3	B	124	130	Right-handed alpha
Helix 13	AB4	B	131	142	Right-handed alpha
Helix 14	AB5	B	147	168	Right-handed alpha
Helix 15	AB6	B	172	174	Right-handed 310
Helix 16	AB7	C	6	11	Right-handed 310
Helix 17	AB8	C	12	16	Right-handed 310
Helix 18	AB9	C	37	42	Right-handed 310
Helix 19	AC1	C	45	65	Right-handed alpha
Helix 20	AC2	C	76	80	Right-handed 310
Helix 21	AC3	C	124	130	Right-handed alpha
Helix 22	AC4	C	131	142	Right-handed alpha
Helix 23	AC5	C	147	168	Right-handed alpha
Helix 24	AC6	C	172	174	Right-handed 310
Helix 25	AC7	D	6	11	Right-handed 310
Helix 26	AC8	D	13	17	Right-handed 310
Helix 27	AC9	D	37	41	Right-handed 310
Helix 28	AD1	D	45	66	Right-handed alpha
Helix 29	AD2	D	76	80	Right-handed 310
Helix 30	AD3	D	124	130	Right-handed alpha
Helix 31	AD4	D	131	136	Right-handed alpha
Helix 32	AD5	D	137	142	Right-handed alpha
Helix 33	AD6	D	147	168	Right-handed alpha
Helix 34	AD7	D	172	174	Right-handed 310
Helix 35	AD8	E	6	11	Right-handed 310
Helix 36	AD9	E	37	42	Right-handed 310
Helix 37	AE1	E	45	66	Right-handed alpha
Helix 38	AE2	E	76	80	Right-handed 310
Helix 39	AE3	E	124	130	Right-handed alpha
Helix 40	AE4	E	131	138	Right-handed alpha
Helix 41	AE5	E	139	141	Right-handed 310
Helix 42	AE6	E	147	168	Right-handed alpha
Helix 43	AE7	F	147	163	Right-handed alpha
Helix 44	AE8	G	6	11	Right-handed 310
Helix 45	AE9	G	34	42	Right-handed 310
Helix 46	AF1	G	45	65	Right-handed alpha
Helix 47	AF2	G	76	80	Right-handed 310
Helix 48	AF3	G	124	129	Right-handed alpha
Helix 49	AF4	G	148	168	Right-handed alpha
Helix 50	AF5	H	7	11	Right-handed 310
Helix 51	AF6	H	37	42	Right-handed 310
Helix 52	AF7	H	45	66	Right-handed alpha
Helix 53	AF8	H	124	130	Right-handed alpha
Helix 54	AF9	H	131	138	Right-handed alpha
Helix 55	AG1	H	139	141	Right-handed 310
Helix 56	AG2	H	147	167	Right-handed alpha
Helix 57	AG3	H	172	174	Right-handed 310
Helix 58	AG4	I	5	11	Right-handed 310
Helix 59	AG5	I	37	41	Right-handed 310
Helix 60	AG6	I	45	65	Right-handed alpha
Helix 61	AG7	I	76	80	Right-handed 310
Helix 62	AG8	I	124	129	Right-handed alpha
Helix 63	AG9	I	131	142	Right-handed alpha
Helix 64	AH1	I	147	168	Right-handed alpha
Helix 65	AH2	I	172	174	Right-handed 310

There are 17 sheets in PDB entry 8GKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	24	first strand
Strand 2	A	97	104	anti-parallel
Strand 3	A	87	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	117	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	209	217	anti-parallel
Strand 4	A	188	195	anti-parallel
Strand 5	A	176	182	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	24	first strand
Strand 2	B	97	104	anti-parallel
Strand 3	B	87	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	117	first strand
Strand 2	B	220	228	anti-parallel
Strand 3	B	209	217	anti-parallel
Strand 4	B	188	195	anti-parallel
Strand 5	B	176	182	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	24	first strand
Strand 2	C	97	104	anti-parallel
Strand 3	C	87	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	117	first strand
Strand 2	C	220	228	anti-parallel
Strand 3	C	209	217	anti-parallel
Strand 4	C	188	195	anti-parallel
Strand 5	C	176	182	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	97	104	anti-parallel
Strand 3	D	87	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	117	first strand
Strand 2	D	220	228	anti-parallel
Strand 3	D	209	217	anti-parallel
Strand 4	D	188	195	anti-parallel
Strand 5	D	176	180	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	97	104	anti-parallel
Strand 3	E	87	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	117	first strand
Strand 2	E	220	227	anti-parallel
Strand 3	E	209	217	anti-parallel
Strand 4	E	188	195	anti-parallel
Strand 5	E	176	182	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	116	first strand
Strand 2	F	221	226	anti-parallel
Strand 3	F	209	215	anti-parallel
Strand 4	F	189	194	anti-parallel
Strand 5	F	177	182	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	24	first strand
Strand 2	G	97	104	anti-parallel
Strand 3	G	87	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	117	first strand
Strand 2	G	220	228	anti-parallel
Strand 3	G	209	217	anti-parallel
Strand 4	G	188	195	anti-parallel
Strand 5	G	176	182	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	24	first strand
Strand 2	H	97	103	anti-parallel
Strand 3	H	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	117	first strand
Strand 2	H	220	228	anti-parallel
Strand 3	H	209	217	anti-parallel
Strand 4	H	188	195	anti-parallel
Strand 5	H	176	182	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	24	first strand
Strand 2	I	97	104	anti-parallel
Strand 3	I	87	94	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	108	117	first strand
Strand 2	I	220	228	anti-parallel
Strand 3	I	209	217	anti-parallel
Strand 4	I	188	195	anti-parallel
Strand 5	I	176	182	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GKF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GKF