Analysis of interatomic Contacts of Structural Units in PDB entry:
8GKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GKG entry

There are 5 chains in PDB entry 8GKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 119LYS 722
B
 LEU 119LYS 722
C
 LEU 119LYS 722
D
 LEU 119LYS 722
E
 LEU 119LYS 722
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are145 helices in PDB entry 8GKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 130Right-handed alpha
Helix 2
AA2
A
132 148Right-handed alpha
Helix 3
AA3
A
172 178Right-handed alpha
Helix 4
AA4
A
180 196Right-handed alpha
Helix 5
AA5
A
199 205Right-handed alpha
Helix 6
AA6
A
216 225Right-handed alpha
Helix 7
AA7
A
227 238Right-handed alpha
Helix 8
AA8
A
239 243Right-handed 310
Helix 9
AA9
A
264 272Right-handed alpha
Helix 10
AB1
A
274 284Right-handed alpha
Helix 11
AB2
A
298 306Right-handed alpha
Helix 12
AB3
A
315 328Right-handed alpha
Helix 13
AB4
A
330 335Right-handed 310
Helix 14
AB5
A
337 342Right-handed alpha
Helix 15
AB6
A
343 351Right-handed alpha
Helix 16
AB7
A
353 362Right-handed alpha
Helix 17
AB8
A
416 421Right-handed alpha
Helix 18
AB9
A
432 440Right-handed alpha
Helix 19
AC1
A
440 447Right-handed alpha
Helix 20
AC2
A
448 461Right-handed alpha
Helix 21
AC3
A
487 505Right-handed alpha
Helix 22
AC4
A
521 535Right-handed alpha
Helix 23
AC5
A
551 568Right-handed alpha
Helix 24
AC6
A
585 605Right-handed alpha
Helix 25
AC7
A
629 634Right-handed 310
Helix 26
AC8
A
653 679Right-handed alpha
Helix 27
AC9
A
679 685Right-handed alpha
Helix 28
AD1
A
688 702Right-handed alpha
Helix 29
AD2
A
703 707Right-handed 310
Helix 30
AD3
B
120 130Right-handed alpha
Helix 31
AD4
B
132 148Right-handed alpha
Helix 32
AD5
B
172 178Right-handed alpha
Helix 33
AD6
B
180 196Right-handed alpha
Helix 34
AD7
B
199 205Right-handed alpha
Helix 35
AD8
B
216 225Right-handed alpha
Helix 36
AD9
B
227 238Right-handed alpha
Helix 37
AE1
B
239 243Right-handed 310
Helix 38
AE2
B
264 272Right-handed alpha
Helix 39
AE3
B
274 284Right-handed alpha
Helix 40
AE4
B
298 306Right-handed alpha
Helix 41
AE5
B
315 328Right-handed alpha
Helix 42
AE6
B
330 335Right-handed 310
Helix 43
AE7
B
337 342Right-handed alpha
Helix 44
AE8
B
343 351Right-handed alpha
Helix 45
AE9
B
353 362Right-handed alpha
Helix 46
AF1
B
416 421Right-handed alpha
Helix 47
AF2
B
432 440Right-handed alpha
Helix 48
AF3
B
440 447Right-handed alpha
Helix 49
AF4
B
448 461Right-handed alpha
Helix 50
AF5
B
487 505Right-handed alpha
Helix 51
AF6
B
521 535Right-handed alpha
Helix 52
AF7
B
551 568Right-handed alpha
Helix 53
AF8
B
585 605Right-handed alpha
Helix 54
AF9
B
629 634Right-handed 310
Helix 55
AG1
B
653 679Right-handed alpha
Helix 56
AG2
B
679 685Right-handed alpha
Helix 57
AG3
B
688 702Right-handed alpha
Helix 58
AG4
B
703 707Right-handed 310
Helix 59
AG5
C
120 130Right-handed alpha
Helix 60
AG6
C
132 148Right-handed alpha
Helix 61
AG7
C
172 178Right-handed alpha
Helix 62
AG8
C
180 196Right-handed alpha
Helix 63
AG9
C
199 205Right-handed alpha
Helix 64
AH1
C
216 225Right-handed alpha
Helix 65
AH2
C
227 238Right-handed alpha
Helix 66
AH3
C
239 243Right-handed 310
Helix 67
AH4
C
264 272Right-handed alpha
Helix 68
AH5
C
274 284Right-handed alpha
Helix 69
AH6
C
298 306Right-handed alpha
Helix 70
AH7
C
315 328Right-handed alpha
Helix 71
AH8
C
330 335Right-handed 310
Helix 72
AH9
C
337 342Right-handed alpha
Helix 73
AI1
C
343 351Right-handed alpha
Helix 74
AI2
C
353 362Right-handed alpha
Helix 75
AI3
C
416 421Right-handed alpha
Helix 76
AI4
C
432 440Right-handed alpha
Helix 77
AI5
C
440 447Right-handed alpha
Helix 78
AI6
C
448 461Right-handed alpha
Helix 79
AI7
C
487 505Right-handed alpha
Helix 80
AI8
C
521 535Right-handed alpha
Helix 81
AI9
C
551 568Right-handed alpha
Helix 82
AJ1
C
585 605Right-handed alpha
Helix 83
AJ2
C
629 634Right-handed 310
Helix 84
AJ3
C
653 679Right-handed alpha
Helix 85
AJ4
C
679 685Right-handed alpha
Helix 86
AJ5
C
688 702Right-handed alpha
Helix 87
AJ6
C
703 707Right-handed 310
Helix 88
AJ7
D
120 130Right-handed alpha
Helix 89
AJ8
D
132 148Right-handed alpha
Helix 90
AJ9
D
172 178Right-handed alpha
Helix 91
AK1
D
180 196Right-handed alpha
Helix 92
AK2
D
199 205Right-handed alpha
Helix 93
AK3
D
216 225Right-handed alpha
Helix 94
AK4
D
227 238Right-handed alpha
Helix 95
AK5
D
239 243Right-handed 310
Helix 96
AK6
D
264 272Right-handed alpha
Helix 97
AK7
D
274 284Right-handed alpha
Helix 98
AK8
D
298 306Right-handed alpha
Helix 99
AK9
D
315 328Right-handed alpha
Helix 100
AL1
D
330 335Right-handed 310
Helix 101
AL2
D
337 342Right-handed alpha
Helix 102
AL3
D
343 351Right-handed alpha
Helix 103
AL4
D
353 362Right-handed alpha
Helix 104
AL5
D
416 421Right-handed alpha
Helix 105
AL6
D
432 440Right-handed alpha
Helix 106
AL7
D
440 447Right-handed alpha
Helix 107
AL8
D
448 461Right-handed alpha
Helix 108
AL9
D
487 505Right-handed alpha
Helix 109
AM1
D
521 535Right-handed alpha
Helix 110
AM2
D
551 568Right-handed alpha
Helix 111
AM3
D
585 605Right-handed alpha
Helix 112
AM4
D
629 634Right-handed 310
Helix 113
AM5
D
653 679Right-handed alpha
Helix 114
AM6
D
679 685Right-handed alpha
Helix 115
AM7
D
688 702Right-handed alpha
Helix 116
AM8
D
703 707Right-handed 310
Helix 117
AM9
E
120 130Right-handed alpha
Helix 118
AN1
E
132 148Right-handed alpha
Helix 119
AN2
E
172 178Right-handed alpha
Helix 120
AN3
E
180 196Right-handed alpha
Helix 121
AN4
E
199 205Right-handed alpha
Helix 122
AN5
E
216 225Right-handed alpha
Helix 123
AN6
E
227 238Right-handed alpha
Helix 124
AN7
E
239 243Right-handed 310
Helix 125
AN8
E
264 272Right-handed alpha
Helix 126
AN9
E
274 284Right-handed alpha
Helix 127
AO1
E
298 306Right-handed alpha
Helix 128
AO2
E
315 328Right-handed alpha
Helix 129
AO3
E
330 335Right-handed 310
Helix 130
AO4
E
337 342Right-handed alpha
Helix 131
AO5
E
343 351Right-handed alpha
Helix 132
AO6
E
353 362Right-handed alpha
Helix 133
AO7
E
416 421Right-handed alpha
Helix 134
AO8
E
432 440Right-handed alpha
Helix 135
AO9
E
440 447Right-handed alpha
Helix 136
AP1
E
448 461Right-handed alpha
Helix 137
AP2
E
487 505Right-handed alpha
Helix 138
AP3
E
521 535Right-handed alpha
Helix 139
AP4
E
551 568Right-handed alpha
Helix 140
AP5
E
585 605Right-handed alpha
Helix 141
AP6
E
629 634Right-handed 310
Helix 142
AP7
E
653 679Right-handed alpha
Helix 143
AP8
E
679 685Right-handed alpha
Helix 144
AP9
E
688 702Right-handed alpha
Helix 145
AQ1
E
703 707Right-handed 310
Back to top of page
There are no sheets in PDB entry 8GKG
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il