Analysis of interatomic Contacts of Structural Units in PDB entry:
8GLC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GLC entry

There are 3 chains in PDB entry 8GLC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ALA 386
D	THR 2	ILE 64
A	MET 1	GLN 255

There are 30 helices in PDB entry 8GLC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	13	Right-handed alpha
Helix 2	AA2	B	28	45	Right-handed alpha
Helix 3	AA3	B	59	74	Right-handed alpha
Helix 4	AA4	B	85	97	Right-handed alpha
Helix 5	AA5	B	107	111	Right-handed 310
Helix 6	AA6	B	161	169	Right-handed alpha
Helix 7	AA7	B	189	196	Right-handed alpha
Helix 8	AA8	B	197	202	Right-handed alpha
Helix 9	AA9	B	215	226	Right-handed alpha
Helix 10	AB1	B	234	244	Right-handed alpha
Helix 11	AB2	B	245	249	Right-handed 310
Helix 12	AB3	B	262	273	Right-handed alpha
Helix 13	AB4	B	349	356	Right-handed alpha
Helix 14	AB5	D	43	55	Right-handed alpha
Helix 15	AB6	D	60	64	Right-handed 310
Helix 16	AB7	A	2	13	Right-handed alpha
Helix 17	AB8	A	28	45	Right-handed alpha
Helix 18	AB9	A	59	74	Right-handed alpha
Helix 19	AC1	A	85	97	Right-handed alpha
Helix 20	AC2	A	107	111	Right-handed 310
Helix 21	AC3	A	161	169	Right-handed alpha
Helix 22	AC4	A	189	196	Right-handed alpha
Helix 23	AC5	A	197	202	Right-handed alpha
Helix 24	AC6	A	215	226	Right-handed alpha
Helix 25	AC7	A	234	244	Right-handed alpha
Helix 26	AC8	A	245	249	Right-handed 310
Helix 27	AC9	A	262	273	Right-handed alpha
Helix 28	AD1	A	349	356	Right-handed alpha
Helix 29	AD2	C	44	55	Right-handed alpha
Helix 30	AD3	C	60	64	Right-handed 310

There are 11 sheets in PDB entry 8GLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	205	208	parallel
Strand 4	B	180	183	parallel
Strand 5	B	227	233	parallel
Strand 6	B	253	257	parallel
Strand 7	B	277	281	parallel
Strand 8	B	291	295	anti-parallel
Strand 9	B	302	306	anti-parallel
Strand 10	B	383	385	anti-parallel
Strand 11	B	367	377	anti-parallel
Strand 12	B	332	337	anti-parallel
Strand 13	B	317	320	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	27	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	205	208	parallel
Strand 4	B	180	183	parallel
Strand 5	B	227	233	parallel
Strand 6	B	253	257	parallel
Strand 7	B	277	281	parallel
Strand 8	B	291	295	anti-parallel
Strand 9	B	302	306	anti-parallel
Strand 10	B	383	385	anti-parallel
Strand 11	B	367	377	anti-parallel
Strand 12	B	357	359	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	52	56	parallel
Strand 3	B	100	103	parallel
Strand 4	B	116	119	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	A	131	135	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	146	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	345	346	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	26	first strand
Strand 2	D	12	17	anti-parallel
Strand 3	D	35	42	anti-parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	17	21	anti-parallel
Strand 3	A	205	208	parallel
Strand 4	A	180	183	parallel
Strand 5	A	229	233	parallel
Strand 6	A	253	257	parallel
Strand 7	A	277	281	parallel
Strand 8	A	290	295	anti-parallel
Strand 9	A	302	306	anti-parallel
Strand 10	A	383	385	anti-parallel
Strand 11	A	367	377	anti-parallel
Strand 12	A	332	337	anti-parallel
Strand 13	A	317	320	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	27	first strand
Strand 2	A	17	21	anti-parallel
Strand 3	A	205	208	parallel
Strand 4	A	180	183	parallel
Strand 5	A	229	233	parallel
Strand 6	A	253	257	parallel
Strand 7	A	277	281	parallel
Strand 8	A	290	295	anti-parallel
Strand 9	A	302	306	anti-parallel
Strand 10	A	383	385	anti-parallel
Strand 11	A	367	377	anti-parallel
Strand 12	A	357	359	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	52	56	parallel
Strand 3	A	100	103	parallel
Strand 4	A	116	119	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	146	first strand
Strand 2	A	156	160	anti-parallel
Strand 3	A	345	346	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	26	first strand
Strand 2	C	11	17	anti-parallel
Strand 3	C	35	43	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GLC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GLC