Analysis of interatomic Contacts of Structural Units in PDB entry:
8GLG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GLG entry

There are 2 chains in PDB entry 8GLG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4ASN 283
B
 PRO 1ASP 100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 8GLG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 85Right-handed alpha
Helix 2
AA2
A
137 149Right-handed alpha
Helix 3
AA3
A
151 164Right-handed alpha
Helix 4
AA4
A
164 177Right-handed alpha
Helix 5
AA5
A
177 182Right-handed alpha
Helix 6
AA6
A
254 256Right-handed 310
Helix 7
AA7
A
265 269Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 8GLG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
35 41anti-parallel
Strand 3
A
23 32anti-parallel
Strand 4
A
9 20anti-parallel
Strand 5
A
94 104anti-parallel
Strand 6
A
110 118anti-parallel
Strand 7
A
121 127anti-parallel
Strand 8
A
130 133anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
201 211anti-parallel
Strand 3
A
242 252anti-parallel
Strand 4
A
231 232anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
201 211anti-parallel
Strand 3
A
242 252anti-parallel
Strand 4
A
236 238anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
259 264anti-parallel
Strand 4
A
273 276anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
23 32anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
52 53anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
23 32anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
93 96anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il