Analysis of interatomic Contacts of Structural Units in PDB entry:
8GLO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GLO entry

There is 1 chain in PDB entry 8GLO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0ASN 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8GLO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 68Right-handed alpha
Helix 2
AA2
A
69 72Right-handed 310
Helix 3
AA3
A
89 91Right-handed 310
Helix 4
AA4
A
129 134Right-handed alpha
Helix 5
AA5
A
242 246Right-handed 310
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There are 3 sheets in PDB entry 8GLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
117 123anti-parallel
Strand 4
A
106 111anti-parallel
Strand 5
A
83 87anti-parallel
Strand 6
A
76 78anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 20first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
56 57anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 160first strand
Strand 2
A
171 178anti-parallel
Strand 3
A
183 190anti-parallel
Strand 4
A
193 201anti-parallel
Strand 5
A
206 213anti-parallel
Strand 6
A
217 226anti-parallel
Strand 7
A
232 238anti-parallel
Strand 8
A
247 253anti-parallel
Strand 9
A
152 160anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il