Analysis of interatomic Contacts of Structural Units in PDB entry:
8GLX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GLX entry

There are 10 chains in PDB entry 8GLX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ALA 3	VAL 405
X	MET 1	LEU 310
H	A 1	G 50
I	C 1	T 50
E	ALA 3	GLU 485
F	THR 4	GLU 485
C	ALA 3	VAL 405
Y	MET 1	LEU 310
A	ALA 3	GLU 485
B	THR 4	GLU 485

There are181 helices in PDB entry 8GLX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	15	19	Right-handed 310
Helix 2	AA2	G	32	41	Right-handed alpha
Helix 3	AA3	G	49	53	Right-handed 310
Helix 4	AA4	G	54	63	Right-handed alpha
Helix 5	AA5	G	64	69	Right-handed alpha
Helix 6	AA6	G	73	89	Right-handed alpha
Helix 7	AA7	G	100	115	Right-handed alpha
Helix 8	AA8	G	144	150	Right-handed alpha
Helix 9	AA9	G	179	194	Right-handed alpha
Helix 10	AB1	G	199	204	Right-handed alpha
Helix 11	AB2	G	210	224	Right-handed alpha
Helix 12	AB3	G	234	240	Right-handed 310
Helix 13	AB4	G	244	258	Right-handed alpha
Helix 14	AB5	G	268	273	Right-handed 310
Helix 15	AB6	G	305	317	Right-handed alpha
Helix 16	AB7	G	329	341	Right-handed alpha
Helix 17	AB8	G	343	362	Right-handed alpha
Helix 18	AB9	G	367	379	Right-handed alpha
Helix 19	AC1	G	382	392	Right-handed alpha
Helix 20	AC2	G	393	399	Right-handed alpha
Helix 21	AC3	X	12	24	Right-handed alpha
Helix 22	AC4	X	28	37	Right-handed alpha
Helix 23	AC5	X	53	58	Right-handed alpha
Helix 24	AC6	X	66	74	Right-handed alpha
Helix 25	AC7	X	76	85	Right-handed alpha
Helix 26	AC8	X	86	96	Right-handed alpha
Helix 27	AC9	X	101	108	Right-handed alpha
Helix 28	AD1	X	126	135	Right-handed alpha
Helix 29	AD2	X	189	200	Right-handed alpha
Helix 30	AD3	X	201	204	Right-handed 310
Helix 31	AD4	X	216	230	Right-handed alpha
Helix 32	AD5	X	240	248	Right-handed alpha
Helix 33	AD6	X	251	258	Right-handed alpha
Helix 34	AD7	X	269	276	Right-handed alpha
Helix 35	AD8	X	283	295	Right-handed alpha
Helix 36	AD9	X	299	310	Right-handed alpha
Helix 37	AE1	E	15	19	Right-handed 310
Helix 38	AE2	E	21	26	Right-handed alpha
Helix 39	AE3	E	32	37	Right-handed alpha
Helix 40	AE4	E	38	41	Right-handed 310
Helix 41	AE5	E	54	63	Right-handed alpha
Helix 42	AE6	E	73	88	Right-handed alpha
Helix 43	AE7	E	100	113	Right-handed alpha
Helix 44	AE8	E	141	149	Right-handed alpha
Helix 45	AE9	E	150	152	Right-handed 310
Helix 46	AF1	E	179	196	Right-handed alpha
Helix 47	AF2	E	209	224	Right-handed alpha
Helix 48	AF3	E	244	260	Right-handed alpha
Helix 49	AF4	E	270	275	Right-handed alpha
Helix 50	AF5	E	275	281	Right-handed alpha
Helix 51	AF6	E	305	317	Right-handed alpha
Helix 52	AF7	E	329	341	Right-handed alpha
Helix 53	AF8	E	343	362	Right-handed alpha
Helix 54	AF9	E	367	378	Right-handed alpha
Helix 55	AG1	E	379	381	Right-handed 310
Helix 56	AG2	E	382	392	Right-handed alpha
Helix 57	AG3	E	393	400	Right-handed alpha
Helix 58	AG4	E	408	419	Right-handed alpha
Helix 59	AG5	E	426	433	Right-handed alpha
Helix 60	AG6	E	441	448	Right-handed alpha
Helix 61	AG7	E	452	467	Right-handed alpha
Helix 62	AG8	E	471	483	Right-handed alpha
Helix 63	AG9	F	15	19	Right-handed 310
Helix 64	AH1	F	21	26	Right-handed alpha
Helix 65	AH2	F	32	37	Right-handed alpha
Helix 66	AH3	F	47	52	Right-handed alpha
Helix 67	AH4	F	54	64	Right-handed alpha
Helix 68	AH5	F	65	69	Right-handed 310
Helix 69	AH6	F	75	89	Right-handed alpha
Helix 70	AH7	F	100	113	Right-handed alpha
Helix 71	AH8	F	143	151	Right-handed alpha
Helix 72	AH9	F	179	195	Right-handed alpha
Helix 73	AI1	F	198	203	Right-handed alpha
Helix 74	AI2	F	209	224	Right-handed alpha
Helix 75	AI3	F	233	237	Right-handed 310
Helix 76	AI4	F	244	254	Right-handed alpha
Helix 77	AI5	F	255	257	Right-handed 310
Helix 78	AI6	F	278	287	Right-handed alpha
Helix 79	AI7	F	305	318	Right-handed alpha
Helix 80	AI8	F	329	341	Right-handed alpha
Helix 81	AI9	F	343	362	Right-handed alpha
Helix 82	AJ1	F	367	379	Right-handed alpha
Helix 83	AJ2	F	382	392	Right-handed alpha
Helix 84	AJ3	F	393	400	Right-handed alpha
Helix 85	AJ4	F	407	424	Right-handed alpha
Helix 86	AJ5	F	429	434	Right-handed alpha
Helix 87	AJ6	F	437	446	Right-handed alpha
Helix 88	AJ7	F	455	467	Right-handed alpha
Helix 89	AJ8	F	471	485	Right-handed alpha
Helix 90	AJ9	C	15	19	Right-handed 310
Helix 91	AK1	C	21	26	Right-handed alpha
Helix 92	AK2	C	32	40	Right-handed alpha
Helix 93	AK3	C	47	53	Right-handed 310
Helix 94	AK4	C	54	63	Right-handed alpha
Helix 95	AK5	C	64	69	Right-handed alpha
Helix 96	AK6	C	74	90	Right-handed alpha
Helix 97	AK7	C	100	107	Right-handed alpha
Helix 98	AK8	C	107	115	Right-handed alpha
Helix 99	AK9	C	141	151	Right-handed alpha
Helix 100	AL1	C	179	192	Right-handed alpha
Helix 101	AL2	C	199	204	Right-handed alpha
Helix 102	AL3	C	209	224	Right-handed alpha
Helix 103	AL4	C	233	239	Right-handed 310
Helix 104	AL5	C	244	258	Right-handed alpha
Helix 105	AL6	C	268	272	Right-handed 310
Helix 106	AL7	C	305	317	Right-handed alpha
Helix 107	AL8	C	329	341	Right-handed alpha
Helix 108	AL9	C	344	362	Right-handed alpha
Helix 109	AM1	C	367	379	Right-handed alpha
Helix 110	AM2	C	382	392	Right-handed alpha
Helix 111	AM3	C	393	399	Right-handed alpha
Helix 112	AM4	Y	12	24	Right-handed alpha
Helix 113	AM5	Y	28	37	Right-handed alpha
Helix 114	AM6	Y	53	59	Right-handed alpha
Helix 115	AM7	Y	66	74	Right-handed alpha
Helix 116	AM8	Y	76	85	Right-handed alpha
Helix 117	AM9	Y	86	97	Right-handed alpha
Helix 118	AN1	Y	101	108	Right-handed alpha
Helix 119	AN2	Y	124	135	Right-handed alpha
Helix 120	AN3	Y	189	204	Right-handed alpha
Helix 121	AN4	Y	205	210	Right-handed 310
Helix 122	AN5	Y	214	230	Right-handed alpha
Helix 123	AN6	Y	240	250	Right-handed alpha
Helix 124	AN7	Y	251	258	Right-handed alpha
Helix 125	AN8	Y	269	276	Right-handed alpha
Helix 126	AN9	Y	283	295	Right-handed alpha
Helix 127	AO1	Y	299	310	Right-handed alpha
Helix 128	AO2	A	15	19	Right-handed 310
Helix 129	AO3	A	29	34	Right-handed alpha
Helix 130	AO4	A	36	41	Right-handed 310
Helix 131	AO5	A	47	52	Right-handed alpha
Helix 132	AO6	A	54	63	Right-handed alpha
Helix 133	AO7	A	64	69	Right-handed alpha
Helix 134	AO8	A	73	89	Right-handed alpha
Helix 135	AO9	A	90	92	Right-handed 310
Helix 136	AP1	A	100	113	Right-handed alpha
Helix 137	AP2	A	142	150	Right-handed alpha
Helix 138	AP3	A	179	196	Right-handed alpha
Helix 139	AP4	A	209	224	Right-handed alpha
Helix 140	AP5	A	233	237	Right-handed 310
Helix 141	AP6	A	238	243	Right-handed alpha
Helix 142	AP7	A	244	260	Right-handed alpha
Helix 143	AP8	A	268	273	Right-handed alpha
Helix 144	AP9	A	274	277	Right-handed 310
Helix 145	AQ1	A	305	318	Right-handed alpha
Helix 146	AQ2	A	329	340	Right-handed alpha
Helix 147	AQ3	A	343	361	Right-handed alpha
Helix 148	AQ4	A	367	378	Right-handed alpha
Helix 149	AQ5	A	382	392	Right-handed alpha
Helix 150	AQ6	A	393	400	Right-handed alpha
Helix 151	AQ7	A	407	419	Right-handed alpha
Helix 152	AQ8	A	426	435	Right-handed alpha
Helix 153	AQ9	A	441	447	Right-handed alpha
Helix 154	AR1	A	452	466	Right-handed alpha
Helix 155	AR2	A	475	485	Right-handed alpha
Helix 156	AR3	B	15	19	Right-handed 310
Helix 157	AR4	B	21	26	Right-handed alpha
Helix 158	AR5	B	47	51	Right-handed 310
Helix 159	AR6	B	54	69	Right-handed alpha
Helix 160	AR7	B	75	88	Right-handed alpha
Helix 161	AR8	B	100	114	Right-handed alpha
Helix 162	AR9	B	143	151	Right-handed alpha
Helix 163	AS1	B	181	195	Right-handed alpha
Helix 164	AS2	B	198	203	Right-handed alpha
Helix 165	AS3	B	209	224	Right-handed alpha
Helix 166	AS4	B	234	237	Right-handed 310
Helix 167	AS5	B	238	243	Right-handed alpha
Helix 168	AS6	B	246	253	Right-handed alpha
Helix 169	AS7	B	268	273	Right-handed alpha
Helix 170	AS8	B	278	286	Right-handed alpha
Helix 171	AS9	B	305	318	Right-handed alpha
Helix 172	AT1	B	329	341	Right-handed alpha
Helix 173	AT2	B	343	362	Right-handed alpha
Helix 174	AT3	B	367	379	Right-handed alpha
Helix 175	AT4	B	382	392	Right-handed alpha
Helix 176	AT5	B	393	400	Right-handed alpha
Helix 177	AT6	B	407	424	Right-handed alpha
Helix 178	AT7	B	426	434	Right-handed alpha
Helix 179	AT8	B	440	449	Right-handed alpha
Helix 180	AT9	B	455	467	Right-handed alpha
Helix 181	AU1	B	478	484	Right-handed alpha

There are 14 sheets in PDB entry 8GLX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	173	first strand
Strand 2	G	228	232	parallel
Strand 3	G	263	267	parallel
Strand 4	G	131	136	parallel
Strand 5	G	289	293	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	158	first strand
Strand 2	G	165	167	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	156	158	parallel
Strand 3	E	165	167	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	173	first strand
Strand 2	E	228	232	parallel
Strand 3	E	263	267	parallel
Strand 4	E	132	136	parallel
Strand 5	E	289	293	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	299	300	first strand
Strand 2	E	303	304	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	156	158	parallel
Strand 3	F	165	167	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	173	first strand
Strand 2	F	228	232	parallel
Strand 3	F	263	267	parallel
Strand 4	F	131	136	parallel
Strand 5	F	291	293	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	156	158	parallel
Strand 3	C	165	167	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	228	232	parallel
Strand 3	C	263	267	parallel
Strand 4	C	132	135	parallel
Strand 5	C	289	292	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	120	123	first strand
Strand 2	Y	159	164	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	156	158	parallel
Strand 3	A	165	173	anti-parallel
Strand 4	A	225	232	parallel
Strand 5	A	263	267	parallel
Strand 6	A	132	136	parallel
Strand 7	A	289	293	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	303	304	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	156	158	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	173	first strand
Strand 2	B	229	232	parallel
Strand 3	B	263	267	parallel
Strand 4	B	131	136	parallel
Strand 5	B	290	293	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GLX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GLX