Analysis of interatomic Contacts of Structural Units in PDB entry:
8GM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GM3 entry

There are 2 chains in PDB entry 8GM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LYS 218
B
 GLY 1LYS 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8GM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed alpha
Helix 2
AA2
A
192 195Right-handed 310
Helix 3
AA3
A
207 211Right-handed 310
Helix 4
AA4
B
42 46Right-handed alpha
Helix 5
AA5
B
192 195Right-handed 310
Helix 6
AA6
B
207 211Right-handed 310
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There are 6 sheets in PDB entry 8GM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
95 104anti-parallel
Strand 3
A
80 87anti-parallel
Strand 4
A
68 74anti-parallel
Strand 5
A
57 60anti-parallel
Strand 6
A
51 54anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
30 34anti-parallel
Strand 3
A
39 41anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 123first strand
Strand 2
A
132 139anti-parallel
Strand 3
A
144 150anti-parallel
Strand 4
A
155 163anti-parallel
Strand 5
A
168 175anti-parallel
Strand 6
A
182 191anti-parallel
Strand 7
A
197 203anti-parallel
Strand 8
A
212 217anti-parallel
Strand 9
A
115 123anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
95 104anti-parallel
Strand 3
B
80 87anti-parallel
Strand 4
B
68 74anti-parallel
Strand 5
B
57 60anti-parallel
Strand 6
B
51 54anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
30 34anti-parallel
Strand 3
B
39 41anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 123first strand
Strand 2
B
132 139anti-parallel
Strand 3
B
144 150anti-parallel
Strand 4
B
155 162anti-parallel
Strand 5
B
168 177anti-parallel
Strand 6
B
180 191anti-parallel
Strand 7
B
197 203anti-parallel
Strand 8
B
212 217anti-parallel
Strand 9
B
115 123anti-parallel
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