Analysis of interatomic Contacts of Structural Units in PDB entry:
8GM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GM6 entry

There are 2 chains in PDB entry 8GM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ARG 169
B
 MSE 1CYS 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8GM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 60Right-handed alpha
Helix 2
AA2
A
63 71Right-handed alpha
Helix 3
AA3
A
87 92Right-handed alpha
Helix 4
AA4
A
101 105Right-handed 310
Helix 5
AA5
A
142 151Right-handed alpha
Helix 6
AA6
A
157 167Right-handed alpha
Helix 7
AA7
B
49 60Right-handed alpha
Helix 8
AA8
B
63 71Right-handed alpha
Helix 9
AA9
B
87 92Right-handed alpha
Helix 10
AB1
B
101 105Right-handed 310
Helix 11
AB2
B
142 152Right-handed alpha
Helix 12
AB3
B
157 168Right-handed alpha
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There are 4 sheets in PDB entry 8GM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
10 15anti-parallel
Strand 3
A
18 25anti-parallel
Strand 4
A
28 34anti-parallel
Strand 5
A
38 42anti-parallel
Strand 6
A
78 82anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
109 116anti-parallel
Strand 3
A
119 126anti-parallel
Strand 4
A
129 138anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
10 15anti-parallel
Strand 3
B
18 25anti-parallel
Strand 4
B
28 34anti-parallel
Strand 5
B
38 42anti-parallel
Strand 6
B
78 82anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
109 116anti-parallel
Strand 3
B
119 126anti-parallel
Strand 4
B
129 138anti-parallel
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