Analysis of interatomic Contacts of Structural Units in PDB entry:
8GM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GM8 entry

There are 6 chains in PDB entry 8GM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 257
B
 PRO 0ASP 92
C
 GLY 1SER 257
D
 GLY 1ASP 92
E
 GLY 1THR 232
F
 GLY 1LEU 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8GM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 52Right-handed alpha
Helix 2
AA2
A
54 72Right-handed alpha
Helix 3
AA3
A
72 84Right-handed alpha
Helix 4
AA4
A
133 144Right-handed alpha
Helix 5
AA5
A
145 153Right-handed alpha
Helix 6
AA6
A
153 173Right-handed alpha
Helix 7
AA7
A
245 247Right-handed 310
Helix 8
AA8
C
46 50Right-handed 310
Helix 9
AA9
C
54 72Right-handed alpha
Helix 10
AB1
C
72 83Right-handed alpha
Helix 11
AB2
C
132 144Right-handed alpha
Helix 12
AB3
C
145 153Right-handed alpha
Helix 13
AB4
C
153 173Right-handed alpha
Helix 14
AB5
C
245 249Right-handed 310
Helix 15
AB6
E
46 53Right-handed alpha
Helix 16
AB7
E
54 72Right-handed alpha
Helix 17
AB8
E
76 83Right-handed alpha
Helix 18
AB9
E
132 144Right-handed alpha
Helix 19
AC1
E
145 153Right-handed alpha
Helix 20
AC2
E
153 166Right-handed alpha
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There are 18 sheets in PDB entry 8GM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
4 11anti-parallel
Strand 3
A
26 27anti-parallel
Strand 4
A
30 31anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
4 11anti-parallel
Strand 3
A
88 96anti-parallel
Strand 4
A
102 110anti-parallel
Strand 5
A
116 119anti-parallel
Strand 6
A
124 127anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
43 44anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 183first strand
Strand 2
A
193 201anti-parallel
Strand 3
A
233 240anti-parallel
Strand 4
A
222 227anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
206 212anti-parallel
Strand 3
A
249 255anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
48 49anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
53 54anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
85 90anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 44first strand
Strand 2
C
30 36anti-parallel
Strand 3
C
21 27anti-parallel
Strand 4
C
4 11anti-parallel
Strand 5
C
88 95anti-parallel
Strand 6
C
103 110anti-parallel
Strand 7
C
114 119anti-parallel
Strand 8
C
124 127anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 183first strand
Strand 2
C
193 196anti-parallel
Strand 3
C
233 240anti-parallel
Strand 4
C
199 201anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 183first strand
Strand 2
C
193 196anti-parallel
Strand 3
C
233 240anti-parallel
Strand 4
C
221 227anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 217first strand
Strand 2
C
206 211anti-parallel
Strand 3
C
250 255anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 9first strand
Strand 2
D
19 26anti-parallel
Strand 3
D
60 68anti-parallel
Strand 4
D
48 49anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 9first strand
Strand 2
D
19 26anti-parallel
Strand 3
D
60 68anti-parallel
Strand 4
D
53 54anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 43first strand
Strand 2
D
33 39anti-parallel
Strand 3
D
76 82anti-parallel
Strand 4
D
85 90anti-parallel
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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 44first strand
Strand 2
E
30 36anti-parallel
Strand 3
E
21 27anti-parallel
Strand 4
E
3 11anti-parallel
Strand 5
E
88 96anti-parallel
Strand 6
E
105 110anti-parallel
Strand 7
E
114 119anti-parallel
Strand 8
E
124 127anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
24 26first strand
Strand 2
F
60 63anti-parallel
Strand 3
F
53 54anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
33 35first strand
Strand 2
F
78 82anti-parallel
Strand 3
F
85 89anti-parallel
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