Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GMB entry

There is 1 chain in PDB entry 8GMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 214SER 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8GMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
274 279Right-handed alpha
Helix 2
AA2
A
289 299Right-handed alpha
Helix 3
AA3
A
354 364Right-handed alpha
Helix 4
AA4
A
438 445Right-handed alpha
Helix 5
AA5
A
445 451Right-handed alpha
Helix 6
AA6
A
482 488Right-handed alpha
Helix 7
AA7
A
497 515Right-handed alpha
Helix 8
AA8
A
523 525Right-handed 310
Helix 9
AA9
A
541 546Right-handed 310
Helix 10
AB1
A
548 553Right-handed alpha
Helix 11
AB2
A
565 572Right-handed alpha
Helix 12
AB3
A
575 592Right-handed alpha
Helix 13
AB4
A
602 613Right-handed alpha
Helix 14
AB5
A
623 633Right-handed alpha
Helix 15
AB6
A
637 641Right-handed 310
Helix 16
AB7
A
643 659Right-handed alpha
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There are 6 sheets in PDB entry 8GMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 221first strand
Strand 2
A
269 271anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
251 256anti-parallel
Strand 3
A
261 265anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
305 307parallel
Strand 3
A
315 320anti-parallel
Strand 4
A
331 338anti-parallel
Strand 5
A
344 346anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
409 411anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
425 431anti-parallel
Strand 4
A
471 475anti-parallel
Strand 5
A
460 464anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
527 529anti-parallel
Strand 3
A
535 537anti-parallel
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