Analysis of interatomic Contacts of Structural Units in PDB entry:
8GME

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GME entry

There are 6 chains in PDB entry 8GME (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 24	ASP 269
C	MET 1	VAL 439
B	SER 24	PHE 270
D	THR 7	VAL 439
P	T 595	T 605
Q	T 599	T 607

There are 47 helices in PDB entry 8GME. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	87	97	Right-handed alpha
Helix 4	AA4	A	97	102	Right-handed alpha
Helix 5	AA5	A	102	110	Right-handed alpha
Helix 6	AA6	A	127	131	Right-handed 310
Helix 7	AA7	A	140	152	Right-handed alpha
Helix 8	AA8	A	202	211	Right-handed alpha
Helix 9	AA9	A	216	221	Right-handed 310
Helix 10	AB1	A	227	239	Right-handed alpha
Helix 11	AB2	A	248	268	Right-handed alpha
Helix 12	AB3	C	7	23	Right-handed alpha
Helix 13	AB4	C	37	53	Right-handed alpha
Helix 14	AB5	C	63	75	Right-handed alpha
Helix 15	AB6	C	81	86	Right-handed alpha
Helix 16	AB7	C	121	132	Right-handed alpha
Helix 17	AB8	C	160	164	Right-handed 310
Helix 18	AB9	C	181	193	Right-handed alpha
Helix 19	AC1	C	213	227	Right-handed alpha
Helix 20	AC2	C	241	257	Right-handed alpha
Helix 21	AC3	C	345	364	Right-handed alpha
Helix 22	AC4	C	374	382	Right-handed alpha
Helix 23	AC5	C	410	416	Right-handed 310
Helix 24	AC6	C	417	431	Right-handed alpha
Helix 25	AC7	B	78	82	Right-handed 310
Helix 26	AC8	B	87	96	Right-handed alpha
Helix 27	AC9	B	97	102	Right-handed alpha
Helix 28	AD1	B	102	109	Right-handed alpha
Helix 29	AD2	B	127	131	Right-handed 310
Helix 30	AD3	B	140	152	Right-handed alpha
Helix 31	AD4	B	202	213	Right-handed alpha
Helix 32	AD5	B	215	220	Right-handed alpha
Helix 33	AD6	B	227	239	Right-handed alpha
Helix 34	AD7	B	247	258	Right-handed alpha
Helix 35	AD8	B	258	265	Right-handed alpha
Helix 36	AD9	D	8	23	Right-handed alpha
Helix 37	AE1	D	38	53	Right-handed alpha
Helix 38	AE2	D	63	75	Right-handed alpha
Helix 39	AE3	D	121	132	Right-handed alpha
Helix 40	AE4	D	160	164	Right-handed 310
Helix 41	AE5	D	181	193	Right-handed alpha
Helix 42	AE6	D	214	227	Right-handed alpha
Helix 43	AE7	D	241	257	Right-handed alpha
Helix 44	AE8	D	345	365	Right-handed alpha
Helix 45	AE9	D	376	382	Right-handed alpha
Helix 46	AF1	D	410	416	Right-handed 310
Helix 47	AF2	D	417	432	Right-handed alpha

There are 17 sheets in PDB entry 8GME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	76	first strand
Strand 2	A	59	68	anti-parallel
Strand 3	A	111	123	anti-parallel
Strand 4	A	134	139	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	76	first strand
Strand 2	A	59	68	anti-parallel
Strand 3	A	111	123	anti-parallel
Strand 4	A	41	47	anti-parallel
Strand 5	A	173	180	anti-parallel
Strand 6	A	183	185	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	137	142	parallel
Strand 3	C	111	114	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	79	80	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	99	100	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	201	first strand
Strand 2	C	204	205	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	393	first strand
Strand 2	C	235	238	parallel
Strand 3	C	403	408	parallel
Strand 4	C	432	438	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	310	first strand
Strand 2	C	317	329	anti-parallel
Strand 3	C	337	342	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	310	first strand
Strand 2	C	317	329	anti-parallel
Strand 3	C	296	301	anti-parallel
Strand 4	C	268	271	anti-parallel
Strand 5	C	387	389	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	277	first strand
Strand 2	C	288	289	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	76	first strand
Strand 2	B	59	68	anti-parallel
Strand 3	B	111	123	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	76	first strand
Strand 2	B	59	68	anti-parallel
Strand 3	B	111	123	anti-parallel
Strand 4	B	41	46	anti-parallel
Strand 5	B	173	180	anti-parallel
Strand 6	B	183	185	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	111	115	parallel
Strand 3	D	137	141	parallel
Strand 4	D	27	30	parallel
Strand 5	D	168	169	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	204	206	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	394	first strand
Strand 2	D	235	239	parallel
Strand 3	D	405	409	parallel
Strand 4	D	437	438	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	342	first strand
Strand 2	D	318	330	anti-parallel
Strand 3	D	296	309	anti-parallel
Strand 4	D	268	271	anti-parallel
Strand 5	D	387	389	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	281	first strand
Strand 2	D	284	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GME

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GME