Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GMG entry

There is 1 chain in PDB entry 8GMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 38GLY 1276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8GMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 83Right-handed alpha
Helix 2
AA2
A
106 158Right-handed alpha
Helix 3
AA3
A
159 166Right-handed alpha
Helix 4
AA4
A
167 187Right-handed alpha
Helix 5
AA5
A
188 211Right-handed alpha
Helix 6
AA6
A
211 260Right-handed alpha
Helix 7
AA7
A
260 268Right-handed alpha
Helix 8
AA8
A
269 324Right-handed alpha
Helix 9
AA9
A
327 348Right-handed alpha
Helix 10
AB1
A
348 370Right-handed alpha
Helix 11
AB2
A
401 405Right-handed 310
Helix 12
AB3
A
433 441Right-handed alpha
Helix 13
AB4
A
462 469Right-handed alpha
Helix 14
AB5
A
483 492Right-handed alpha
Helix 15
AB6
A
496 507Right-handed alpha
Helix 16
AB7
A
509 516Right-handed alpha
Helix 17
AB8
A
532 548Right-handed alpha
Helix 18
AB9
A
562 578Right-handed alpha
Helix 19
AC1
A
588 594Right-handed alpha
Helix 20
AC2
A
611 619Right-handed alpha
Helix 21
AC3
A
620 630Right-handed alpha
Helix 22
AC4
A
698 705Right-handed alpha
Helix 23
AC5
A
708 738Right-handed alpha
Helix 24
AC6
A
745 798Right-handed alpha
Helix 25
AC7
A
800 806Right-handed alpha
Helix 26
AC8
A
811 854Right-handed alpha
Helix 27
AC9
A
856 903Right-handed alpha
Helix 28
AD1
A
903 910Right-handed alpha
Helix 29
AD2
A
912 966Right-handed alpha
Helix 30
AD3
A
970 992Right-handed alpha
Helix 31
AD4
A
997 1013Right-handed alpha
Helix 32
AD5
A
1077 1084Right-handed alpha
Helix 33
AD6
A
1105 1112Right-handed alpha
Helix 34
AD7
A
1126 1133Right-handed alpha
Helix 35
AD8
A
1141 1152Right-handed alpha
Helix 36
AD9
A
1154 1161Right-handed alpha
Helix 37
AE1
A
1177 1192Right-handed alpha
Helix 38
AE2
A
1207 1221Right-handed alpha
Helix 39
AE3
A
1233 1240Right-handed alpha
Helix 40
AE4
A
1256 1263Right-handed alpha
Helix 41
AE5
A
1265 1273Right-handed alpha
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There are 5 sheets in PDB entry 8GMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 417first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
452 453anti-parallel
Strand 4
A
456 457anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
410 411anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 473first strand
Strand 2
A
551 555parallel
Strand 3
A
581 585parallel
Strand 4
A
422 426parallel
Strand 5
A
597 602parallel
Strand 6
A
605 610anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1053 1060first strand
Strand 2
A
1035 1042anti-parallel
Strand 3
A
1091 1096anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1113 1116first strand
Strand 2
A
1196 1200parallel
Strand 3
A
1226 1230parallel
Strand 4
A
1065 1070parallel
Strand 5
A
1242 1247parallel
Strand 6
A
1250 1255anti-parallel
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