Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GMH entry

There are 6 chains in PDB entry 8GMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MSE 1ASN 222
C
 SER 2ASN 139
D
 GLY 5ASN 82
A
 MSE 1SER 223
E
 SER 2ALA 138
F
 GLY 5ASN 82
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8GMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 38Right-handed alpha
Helix 2
AA2
B
44 57Right-handed alpha
Helix 3
AA3
B
57 87Right-handed alpha
Helix 4
AA4
B
98 106Right-handed alpha
Helix 5
AA5
B
107 129Right-handed alpha
Helix 6
AA6
B
140 165Right-handed alpha
Helix 7
AA7
B
171 190Right-handed alpha
Helix 8
AA8
B
197 205Right-handed alpha
Helix 9
AA9
B
207 221Right-handed alpha
Helix 10
AB1
C
4 55Right-handed alpha
Helix 11
AB2
C
56 63Right-handed 310
Helix 12
AB3
C
72 138Right-handed alpha
Helix 13
AB4
D
7 24Right-handed alpha
Helix 14
AB5
D
38 43Right-handed alpha
Helix 15
AB6
D
43 82Right-handed alpha
Helix 16
AB7
A
5 39Right-handed alpha
Helix 17
AB8
A
44 57Right-handed alpha
Helix 18
AB9
A
57 87Right-handed alpha
Helix 19
AC1
A
98 106Right-handed alpha
Helix 20
AC2
A
107 129Right-handed alpha
Helix 21
AC3
A
140 166Right-handed alpha
Helix 22
AC4
A
171 190Right-handed alpha
Helix 23
AC5
A
197 205Right-handed alpha
Helix 24
AC6
A
207 222Right-handed alpha
Helix 25
AC7
E
3 55Right-handed alpha
Helix 26
AC8
E
56 63Right-handed 310
Helix 27
AC9
E
72 138Right-handed alpha
Helix 28
AD1
F
7 24Right-handed alpha
Helix 29
AD2
F
38 43Right-handed alpha
Helix 30
AD3
F
43 82Right-handed alpha
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There are 2 sheets in PDB entry 8GMH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
95 97anti-parallel
Strand 3
C
70 71anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
95 97anti-parallel
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