Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GMI entry

There are 8 chains in PDB entry 8GMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	LEU 370
B	MET 1	ALA 373
C	MET 1	THR 371
D	VAL 3	THR 372
E	PRO 5	THR 371
F	THR 2	ALA 373
G	VAL 9	LEU 370
H	VAL 9	THR 371

There are163 helices in PDB entry 8GMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	13	Right-handed 310
Helix 2	AA2	A	39	45	Right-handed alpha
Helix 3	AA3	A	48	59	Right-handed alpha
Helix 4	AA4	A	79	90	Right-handed alpha
Helix 5	AA5	A	90	96	Right-handed alpha
Helix 6	AA6	A	99	103	Right-handed 310
Helix 7	AA7	A	104	129	Right-handed alpha
Helix 8	AA8	A	136	141	Right-handed alpha
Helix 9	AA9	A	145	156	Right-handed alpha
Helix 10	AB1	A	159	173	Right-handed alpha
Helix 11	AB2	A	179	191	Right-handed alpha
Helix 12	AB3	A	194	208	Right-handed alpha
Helix 13	AB4	A	209	212	Right-handed 310
Helix 14	AB5	A	218	229	Right-handed alpha
Helix 15	AB6	A	230	241	Right-handed alpha
Helix 16	AB7	A	257	270	Right-handed alpha
Helix 17	AB8	A	274	293	Right-handed alpha
Helix 18	AB9	A	301	313	Right-handed alpha
Helix 19	AC1	A	316	318	Right-handed 310
Helix 20	AC2	A	319	343	Right-handed alpha
Helix 21	AC3	A	359	363	Right-handed 310
Helix 22	AC4	A	365	369	Right-handed 310
Helix 23	AC5	B	39	45	Right-handed alpha
Helix 24	AC6	B	48	59	Right-handed alpha
Helix 25	AC7	B	79	90	Right-handed alpha
Helix 26	AC8	B	90	96	Right-handed alpha
Helix 27	AC9	B	99	103	Right-handed 310
Helix 28	AD1	B	104	129	Right-handed alpha
Helix 29	AD2	B	136	142	Right-handed alpha
Helix 30	AD3	B	145	156	Right-handed alpha
Helix 31	AD4	B	159	173	Right-handed alpha
Helix 32	AD5	B	179	190	Right-handed alpha
Helix 33	AD6	B	194	207	Right-handed alpha
Helix 34	AD7	B	208	212	Right-handed 310
Helix 35	AD8	B	218	229	Right-handed alpha
Helix 36	AD9	B	230	241	Right-handed alpha
Helix 37	AE1	B	257	271	Right-handed alpha
Helix 38	AE2	B	274	293	Right-handed alpha
Helix 39	AE3	B	301	313	Right-handed alpha
Helix 40	AE4	B	316	318	Right-handed 310
Helix 41	AE5	B	319	343	Right-handed alpha
Helix 42	AE6	B	359	363	Right-handed 310
Helix 43	AE7	C	39	45	Right-handed alpha
Helix 44	AE8	C	48	59	Right-handed alpha
Helix 45	AE9	C	79	90	Right-handed alpha
Helix 46	AF1	C	90	96	Right-handed alpha
Helix 47	AF2	C	99	103	Right-handed 310
Helix 48	AF3	C	104	129	Right-handed alpha
Helix 49	AF4	C	136	141	Right-handed alpha
Helix 50	AF5	C	145	156	Right-handed alpha
Helix 51	AF6	C	159	173	Right-handed alpha
Helix 52	AF7	C	179	191	Right-handed alpha
Helix 53	AF8	C	194	207	Right-handed alpha
Helix 54	AF9	C	218	228	Right-handed alpha
Helix 55	AG1	C	230	241	Right-handed alpha
Helix 56	AG2	C	257	270	Right-handed alpha
Helix 57	AG3	C	274	293	Right-handed alpha
Helix 58	AG4	C	301	313	Right-handed alpha
Helix 59	AG5	C	319	343	Right-handed alpha
Helix 60	AG6	C	359	363	Right-handed 310
Helix 61	AG7	C	365	369	Right-handed 310
Helix 62	AG8	D	39	45	Right-handed alpha
Helix 63	AG9	D	48	59	Right-handed alpha
Helix 64	AH1	D	79	90	Right-handed alpha
Helix 65	AH2	D	90	96	Right-handed alpha
Helix 66	AH3	D	99	103	Right-handed 310
Helix 67	AH4	D	104	129	Right-handed alpha
Helix 68	AH5	D	136	141	Right-handed alpha
Helix 69	AH6	D	145	156	Right-handed alpha
Helix 70	AH7	D	159	173	Right-handed alpha
Helix 71	AH8	D	179	191	Right-handed alpha
Helix 72	AH9	D	194	207	Right-handed alpha
Helix 73	AI1	D	208	212	Right-handed 310
Helix 74	AI2	D	218	229	Right-handed alpha
Helix 75	AI3	D	230	241	Right-handed alpha
Helix 76	AI4	D	257	271	Right-handed alpha
Helix 77	AI5	D	274	293	Right-handed alpha
Helix 78	AI6	D	301	313	Right-handed alpha
Helix 79	AI7	D	316	318	Right-handed 310
Helix 80	AI8	D	319	343	Right-handed alpha
Helix 81	AI9	D	359	363	Right-handed 310
Helix 82	AJ1	D	365	369	Right-handed 310
Helix 83	AJ2	E	39	45	Right-handed alpha
Helix 84	AJ3	E	48	59	Right-handed alpha
Helix 85	AJ4	E	79	90	Right-handed alpha
Helix 86	AJ5	E	90	96	Right-handed alpha
Helix 87	AJ6	E	99	103	Right-handed 310
Helix 88	AJ7	E	104	129	Right-handed alpha
Helix 89	AJ8	E	136	141	Right-handed alpha
Helix 90	AJ9	E	145	156	Right-handed alpha
Helix 91	AK1	E	159	173	Right-handed alpha
Helix 92	AK2	E	179	191	Right-handed alpha
Helix 93	AK3	E	194	207	Right-handed alpha
Helix 94	AK4	E	218	226	Right-handed alpha
Helix 95	AK5	E	230	241	Right-handed alpha
Helix 96	AK6	E	257	270	Right-handed alpha
Helix 97	AK7	E	274	293	Right-handed alpha
Helix 98	AK8	E	301	313	Right-handed alpha
Helix 99	AK9	E	319	343	Right-handed alpha
Helix 100	AL1	E	365	369	Right-handed 310
Helix 101	AL2	F	39	45	Right-handed alpha
Helix 102	AL3	F	48	59	Right-handed alpha
Helix 103	AL4	F	79	90	Right-handed alpha
Helix 104	AL5	F	90	96	Right-handed alpha
Helix 105	AL6	F	99	103	Right-handed 310
Helix 106	AL7	F	104	129	Right-handed alpha
Helix 107	AL8	F	136	142	Right-handed alpha
Helix 108	AL9	F	145	156	Right-handed alpha
Helix 109	AM1	F	159	173	Right-handed alpha
Helix 110	AM2	F	179	191	Right-handed alpha
Helix 111	AM3	F	194	207	Right-handed alpha
Helix 112	AM4	F	208	212	Right-handed 310
Helix 113	AM5	F	218	227	Right-handed alpha
Helix 114	AM6	F	230	239	Right-handed alpha
Helix 115	AM7	F	257	271	Right-handed alpha
Helix 116	AM8	F	274	293	Right-handed alpha
Helix 117	AM9	F	301	313	Right-handed alpha
Helix 118	AN1	F	316	318	Right-handed 310
Helix 119	AN2	F	319	343	Right-handed alpha
Helix 120	AN3	F	359	363	Right-handed 310
Helix 121	AN4	F	365	369	Right-handed 310
Helix 122	AN5	G	39	45	Right-handed alpha
Helix 123	AN6	G	48	59	Right-handed alpha
Helix 124	AN7	G	79	90	Right-handed alpha
Helix 125	AN8	G	90	96	Right-handed alpha
Helix 126	AN9	G	99	103	Right-handed 310
Helix 127	AO1	G	104	129	Right-handed alpha
Helix 128	AO2	G	136	142	Right-handed alpha
Helix 129	AO3	G	145	156	Right-handed alpha
Helix 130	AO4	G	159	173	Right-handed alpha
Helix 131	AO5	G	179	191	Right-handed alpha
Helix 132	AO6	G	194	207	Right-handed alpha
Helix 133	AO7	G	218	227	Right-handed alpha
Helix 134	AO8	G	231	241	Right-handed alpha
Helix 135	AO9	G	257	270	Right-handed alpha
Helix 136	AP1	G	274	293	Right-handed alpha
Helix 137	AP2	G	301	313	Right-handed alpha
Helix 138	AP3	G	316	318	Right-handed 310
Helix 139	AP4	G	319	328	Right-handed alpha
Helix 140	AP5	G	328	343	Right-handed alpha
Helix 141	AP6	G	359	363	Right-handed 310
Helix 142	AP7	G	365	369	Right-handed 310
Helix 143	AP8	H	39	45	Right-handed alpha
Helix 144	AP9	H	48	59	Right-handed alpha
Helix 145	AQ1	H	79	90	Right-handed alpha
Helix 146	AQ2	H	90	96	Right-handed alpha
Helix 147	AQ3	H	99	103	Right-handed 310
Helix 148	AQ4	H	104	129	Right-handed alpha
Helix 149	AQ5	H	136	141	Right-handed alpha
Helix 150	AQ6	H	145	156	Right-handed alpha
Helix 151	AQ7	H	159	173	Right-handed alpha
Helix 152	AQ8	H	179	191	Right-handed alpha
Helix 153	AQ9	H	194	207	Right-handed alpha
Helix 154	AR1	H	208	212	Right-handed 310
Helix 155	AR2	H	218	225	Right-handed alpha
Helix 156	AR3	H	231	240	Right-handed alpha
Helix 157	AR4	H	257	270	Right-handed alpha
Helix 158	AR5	H	274	286	Right-handed alpha
Helix 159	AR6	H	288	293	Right-handed alpha
Helix 160	AR7	H	301	313	Right-handed alpha
Helix 161	AR8	H	319	328	Right-handed alpha
Helix 162	AR9	H	328	343	Right-handed alpha
Helix 163	AS1	H	365	369	Right-handed 310

There are 22 sheets in PDB entry 8GMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	20	first strand
Strand 2	B	349	352	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	31	34	anti-parallel
Strand 3	A	37	38	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	298	300	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	B	16	20	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	31	34	anti-parallel
Strand 3	B	37	38	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	298	300	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	D	349	352	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	31	34	anti-parallel
Strand 3	C	37	38	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	250	first strand
Strand 2	C	298	300	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	352	first strand
Strand 2	D	16	20	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	26	first strand
Strand 2	D	31	34	anti-parallel
Strand 3	D	37	38	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	299	300	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	20	first strand
Strand 2	F	349	352	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	26	first strand
Strand 2	E	31	34	anti-parallel
Strand 3	E	37	38	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	250	first strand
Strand 2	E	298	300	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	352	first strand
Strand 2	F	16	20	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	26	first strand
Strand 2	F	31	34	anti-parallel
Strand 3	F	37	38	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	H	349	352	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	26	first strand
Strand 2	G	31	34	anti-parallel
Strand 3	G	37	38	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	349	352	first strand
Strand 2	H	16	20	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	33	34	anti-parallel
Strand 3	H	37	38	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	248	251	first strand
Strand 2	H	297	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMI