Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GMJ entry

There is 1 chain in PDB entry 8GMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35VAL 1273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 8GMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 75Right-handed alpha
Helix 2
AA2
A
107 158Right-handed alpha
Helix 3
AA3
A
159 166Right-handed alpha
Helix 4
AA4
A
168 185Right-handed alpha
Helix 5
AA5
A
187 210Right-handed alpha
Helix 6
AA6
A
211 260Right-handed alpha
Helix 7
AA7
A
260 268Right-handed alpha
Helix 8
AA8
A
269 324Right-handed alpha
Helix 9
AA9
A
327 371Right-handed alpha
Helix 10
AB1
A
401 405Right-handed 310
Helix 11
AB2
A
432 441Right-handed alpha
Helix 12
AB3
A
462 469Right-handed alpha
Helix 13
AB4
A
483 490Right-handed alpha
Helix 14
AB5
A
496 507Right-handed alpha
Helix 15
AB6
A
509 516Right-handed alpha
Helix 16
AB7
A
525 529Right-handed 310
Helix 17
AB8
A
532 548Right-handed alpha
Helix 18
AB9
A
562 576Right-handed alpha
Helix 19
AC1
A
577 580Right-handed 310
Helix 20
AC2
A
611 619Right-handed alpha
Helix 21
AC3
A
620 630Right-handed alpha
Helix 22
AC4
A
698 704Right-handed alpha
Helix 23
AC5
A
707 740Right-handed alpha
Helix 24
AC6
A
744 799Right-handed alpha
Helix 25
AC7
A
800 806Right-handed alpha
Helix 26
AC8
A
810 830Right-handed alpha
Helix 27
AC9
A
830 854Right-handed alpha
Helix 28
AD1
A
857 903Right-handed alpha
Helix 29
AD2
A
903 911Right-handed alpha
Helix 30
AD3
A
912 967Right-handed alpha
Helix 31
AD4
A
970 993Right-handed alpha
Helix 32
AD5
A
994 1014Right-handed alpha
Helix 33
AD6
A
1075 1084Right-handed alpha
Helix 34
AD7
A
1105 1113Right-handed alpha
Helix 35
AD8
A
1126 1133Right-handed alpha
Helix 36
AD9
A
1141 1152Right-handed alpha
Helix 37
AE1
A
1154 1161Right-handed alpha
Helix 38
AE2
A
1170 1174Right-handed 310
Helix 39
AE3
A
1177 1193Right-handed alpha
Helix 40
AE4
A
1207 1221Right-handed alpha
Helix 41
AE5
A
1233 1239Right-handed alpha
Helix 42
AE6
A
1256 1263Right-handed alpha
Helix 43
AE7
A
1265 1273Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8GMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 417first strand
Strand 2
A
392 397anti-parallel
Strand 3
A
452 453anti-parallel
Strand 4
A
456 457anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
597 599parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
551 554parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1056 1060first strand
Strand 2
A
1035 1041anti-parallel
Strand 3
A
1091 1096anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1116first strand
Strand 2
A
1196 1199parallel
Strand 3
A
1226 1229parallel
Strand 4
A
1065 1068parallel
Strand 5
A
1243 1244parallel
Strand 6
A
1254 1255anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il