Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GMM entry

There are 2 chains in PDB entry 8GMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLU 232
B
 ALA 1GLU 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8GMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 45Right-handed 310
Helix 2
AA2
A
49 53Right-handed alpha
Helix 3
AA3
A
54 56Right-handed 310
Helix 4
AA4
A
77 81Right-handed 310
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
204 207Right-handed 310
Helix 7
AA7
A
219 223Right-handed 310
Helix 8
AA8
B
41 45Right-handed 310
Helix 9
AA9
B
49 54Right-handed alpha
Helix 10
AB1
B
77 81Right-handed 310
Helix 11
AB2
B
104 109Right-handed alpha
Helix 12
AB3
B
204 207Right-handed 310
Helix 13
AB4
B
219 223Right-handed 310
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There are 6 sheets in PDB entry 8GMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
114 120anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
A
85 90anti-parallel
Strand 5
A
64 69anti-parallel
Strand 6
A
57 61anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
47 48anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 138first strand
Strand 2
A
147 154anti-parallel
Strand 3
A
159 166anti-parallel
Strand 4
A
169 177anti-parallel
Strand 5
A
183 190anti-parallel
Strand 6
A
194 203anti-parallel
Strand 7
A
209 215anti-parallel
Strand 8
A
224 230anti-parallel
Strand 9
A
130 138anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
114 120anti-parallel
Strand 3
B
96 102anti-parallel
Strand 4
B
85 90anti-parallel
Strand 5
B
64 70anti-parallel
Strand 6
B
57 61anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
34 38anti-parallel
Strand 3
B
47 48anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 138first strand
Strand 2
B
147 154anti-parallel
Strand 3
B
159 166anti-parallel
Strand 4
B
169 177anti-parallel
Strand 5
B
183 190anti-parallel
Strand 6
B
194 203anti-parallel
Strand 7
B
209 215anti-parallel
Strand 8
B
224 230anti-parallel
Strand 9
B
130 138anti-parallel
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