Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GMN entry

There are 4 chains in PDB entry 8GMN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 364	ASN 682
B	ILE 365	SER 683
C	ILE 365	THR 684
D	ILE 365	THR 684

There are 26 helices in PDB entry 8GMN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	445	449	Right-handed 310
Helix 2	AA2	A	473	478	Right-handed alpha
Helix 3	AA3	A	494	498	Right-handed 310
Helix 4	AA4	A	554	558	Right-handed 310
Helix 5	AA5	A	591	597	Right-handed alpha
Helix 6	AA6	A	671	681	Right-handed alpha
Helix 7	AA7	B	445	449	Right-handed 310
Helix 8	AA8	B	473	478	Right-handed alpha
Helix 9	AA9	B	493	498	Right-handed alpha
Helix 10	AB1	B	554	558	Right-handed 310
Helix 11	AB2	B	592	597	Right-handed alpha
Helix 12	AB3	B	671	681	Right-handed alpha
Helix 13	AB4	C	445	449	Right-handed 310
Helix 14	AB5	C	473	478	Right-handed alpha
Helix 15	AB6	C	519	523	Right-handed 310
Helix 16	AB7	C	554	558	Right-handed 310
Helix 17	AB8	C	591	598	Right-handed alpha
Helix 18	AB9	C	622	625	Right-handed 310
Helix 19	AC1	C	671	681	Right-handed alpha
Helix 20	AC2	D	445	449	Right-handed 310
Helix 21	AC3	D	473	479	Right-handed alpha
Helix 22	AC4	D	519	523	Right-handed 310
Helix 23	AC5	D	554	558	Right-handed 310
Helix 24	AC6	D	591	598	Right-handed alpha
Helix 25	AC7	D	622	625	Right-handed 310
Helix 26	AC8	D	671	681	Right-handed alpha

There are 11 sheets in PDB entry 8GMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	393	first strand
Strand 2	A	421	423	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	583	590	anti-parallel
Strand 3	A	616	619	anti-parallel
Strand 4	A	663	667	anti-parallel
Strand 5	A	643	655	anti-parallel
Strand 6	A	635	640	anti-parallel
Strand 7	A	564	569	anti-parallel
Strand 8	A	583	590	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	503	first strand
Strand 2	A	485	486	anti-parallel
Strand 3	A	452	455	anti-parallel
Strand 4	A	460	466	anti-parallel
Strand 5	A	469	472	anti-parallel
Strand 6	A	531	535	anti-parallel
Strand 7	A	505	510	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	393	first strand
Strand 2	B	421	423	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	443	first strand
Strand 2	B	583	590	anti-parallel
Strand 3	B	616	620	anti-parallel
Strand 4	B	662	667	anti-parallel
Strand 5	B	643	655	anti-parallel
Strand 6	B	635	640	anti-parallel
Strand 7	B	564	569	anti-parallel
Strand 8	B	583	590	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	503	first strand
Strand 2	B	485	487	anti-parallel
Strand 3	B	452	455	anti-parallel
Strand 4	B	460	466	anti-parallel
Strand 5	B	469	472	anti-parallel
Strand 6	B	531	535	anti-parallel
Strand 7	B	505	510	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	443	first strand
Strand 2	C	583	588	anti-parallel
Strand 3	C	564	569	anti-parallel
Strand 4	C	635	640	anti-parallel
Strand 5	C	643	655	anti-parallel
Strand 6	C	662	667	anti-parallel
Strand 7	C	616	620	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	503	first strand
Strand 2	C	485	486	anti-parallel
Strand 3	C	452	455	anti-parallel
Strand 4	C	460	466	anti-parallel
Strand 5	C	469	472	anti-parallel
Strand 6	C	531	535	anti-parallel
Strand 7	C	505	510	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	393	first strand
Strand 2	D	421	423	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	443	first strand
Strand 2	D	583	590	anti-parallel
Strand 3	D	616	620	anti-parallel
Strand 4	D	662	667	anti-parallel
Strand 5	D	643	655	anti-parallel
Strand 6	D	635	640	anti-parallel
Strand 7	D	564	569	anti-parallel
Strand 8	D	583	590	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	502	503	first strand
Strand 2	D	485	486	anti-parallel
Strand 3	D	452	455	anti-parallel
Strand 4	D	460	464	anti-parallel
Strand 5	D	469	472	anti-parallel
Strand 6	D	531	535	anti-parallel
Strand 7	D	505	510	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GMN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMN