Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GMY entry

There is 1 chain in PDB entry 8GMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ILE 74GLU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8GMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
74 86Right-handed alpha
Helix 2
AA2
D
89 107Right-handed alpha
Helix 3
AA3
D
197 202Right-handed 310
Helix 4
AA4
D
204 218Right-handed alpha
Helix 5
AA5
D
232 234Right-handed 310
Helix 6
AA6
D
245 253Right-handed alpha
Helix 7
AA7
D
275 286Right-handed alpha
Helix 8
AA8
D
286 294Right-handed alpha
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There are 2 sheets in PDB entry 8GMY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 160first strand
Strand 2
D
144 150parallel
Strand 3
D
126 131parallel
Strand 4
D
190 195parallel
Strand 5
D
219 230parallel
Strand 6
D
265 272anti-parallel
Strand 7
D
254 260anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 169first strand
Strand 2
D
181 186parallel
Strand 3
D
176 178anti-parallel
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