Analysis of interatomic Contacts of Structural Units in PDB entry:
8GMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GMZ entry

There is 1 chain in PDB entry 8GMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 72ILE 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 8GMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
72 86Right-handed alpha
Helix 2
AA2
D
89 108Right-handed alpha
Helix 3
AA3
D
198 202Right-handed 310
Helix 4
AA4
D
204 218Right-handed alpha
Helix 5
AA5
D
242 244Right-handed 310
Helix 6
AA6
D
245 253Right-handed alpha
Helix 7
AA7
D
275 286Right-handed alpha
Helix 8
AA8
D
286 295Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8GMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 160first strand
Strand 2
D
144 150parallel
Strand 3
D
126 131parallel
Strand 4
D
190 196parallel
Strand 5
D
219 228parallel
Strand 6
D
268 272anti-parallel
Strand 7
D
254 259anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 169first strand
Strand 2
D
181 186parallel
Strand 3
D
176 178anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il